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Flashpoint avatarFlashpoint
Added the short name tags in updateGO.py
Flashpoint avatarFlashpoint
Added the short name tags in updateGO.py
Flashpoint avatarFlashpoint
Added short name tags for GO annotations and NCBI gene info/gen history
Flashpoint avatarFlashpoint
Added short names to miRNA Orange server files
Flashpoint avatarFlashpoint
Changed the labels in miRNA files on the Orange server
Flashpoint avatarFlashpoint
Added an organisms shortname() function to the obiTaxonomy.py to add short names to geneset tags
Flashpoint avatarFlashpoint
Removed the select/unselect all gene sets check box from OWSetEnrichment.py widget
Flashpoint avatarFlashpoint
Created the obiGeneAtlasSets.py script, to easily prepare gene sets from GXA
Flashpoint avatarFlashpoint
Added some missing info to the obiGeneAtlas.py API
Flashpoint avatarFlashpoint
Shortened the p_val display statement in OWSetEnrichment.py
Flashpoint avatarFlashpoint
Merged biolab/orange-bioinformatics into default
Marko Toplak avatarMarko Toplak
Moved custom sets to the main widgets.
Marko Toplak avatarMarko Toplak
Minor changes in widget appearance.
Flashpoint avatarFlashpoint
Fixed the bug of having less than 5 genes in a geneset
Flashpoint avatarFlashpoint
Version 2 of the OWCustomSet.py widget
Flashpoint avatarFlashpoint
Version 1 of the OWCustomSet.py widget
Flashpoint avatarFlashpoint
The opened files are now directly imported as custom genesets in OWCustomSets.py
Flashpoint avatarFlashpoint
Changed the hierarchy name of Custom gene sets in obiGeneSets.py. Moved the statistics information about genesets into an info bar.
Flashpoint avatarFlashpoint
The OWCustomSets.py widget's preview pane has been improved to show a quick overview fo the selected file and some additional statistics information has been added to the treeview of the genesets.
Flashpoint avatarFlashpoint
Added a genesets statistics function to obiGeneSets.py. Added additional columns in OWCustomSets.py
Flashpoint avatarFlashpoint
Removed the .pyc files from the commit
Flashpoint avatarFlashpoint
Custom genesets now use Custom Genesets hierarchy in obiGeneSets.py. Renamed OWtest.py to OWCustomSets.py and renamed the widget from test to Custom Gene Sets. Added a preview window to quickly view geneset files before importing them.
Flashpoint avatarFlashpoint
Merged biolab/orange-bioinformatics into default
Marko Toplak avatarMarko Toplak
Renamed inputs and outputs of gene set enrichment widget.
Marko Toplak avatarMarko Toplak
Gene set enrichment widget detects gene sets with taxid == None.
Marko Toplak avatarMarko Toplak
OWtest can now appear in canvas.
Flashpoint avatarFlashpoint
The OWtest.py prototype widget for custom gene sets now correctly imports and deletes the genesets
Flashpoint avatarFlashpoint
The prototype widget for adding and removing custom gene sets
Flashpoint avatarFlashpoint
Added functionality to obiGeneSets.py to remove locally stored gene sets. Created a prototype widget OWtest.py to store and remove own gene sets. The front-end still needs work
Aleš Erjavec avatarAleš Erjavec
Fixed progress bar initialization (call order) in Gene Set Enrichment.
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