orange-bioinformatics / _bioinformatics / obiKEGG /

Diff from to


     deprecated_keywords, deprecated_attribute, deprecated_function_name
-from .. import obiProb
+from .. import obiProb, obiTaxonomy
 from . import databases
 from . import entry
 DEFAULT_CACHE_DIR = conf.params["cache.path"]
-class OrganismNotFoundError(Exception):
-    pass
 class Organism(object):
     A convenience class for retrieving information regarding an
             if ids:
                 name = ids.pop(0) if ids else name
-                raise OrganismNotFoundError(name)
+                raise obiTaxonomy.UnknownSpeciesIdentifier(name)
             return genome[name].organism_code
         except KeyError:
-            raise OrganismNotFoundError(name)
+            raise obiTaxonomy.UnknownSpeciesIdentifier(name)
 def pathways(org):
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.