Source

orange-bioinformatics / _bioinformatics / obiGeneSets.py

Author Commit Message Labels Comments Date
Flashpoint
Added Reactome Pathways genesets for humans
Flashpoint
Removed obiCytobands.py and created genesets in obiGeneSets.py. updateCytobands.py saves only genesets now
Flashpoint
Added Cytobands genesets and modified obiOMIM.py. Both need some extra work.
Flashpoint
Added Phenotypes to DictyMutants hierarchy
Flashpoint
First attempt at configuring Orange server update
Flashpoint
DictyMutants geneset working
Flashpoint
Added pickling to obiDictyMutants.py, changed the URL in obiGeneSets.py's omimGeneSets()
Flashpoint
Added obiDictyMutants.py
Marko Toplak
Fixed update scripts for MeSH, GO, HomoloGene, NCBI_geneinfo, OMIM, PPI. Moved wget to Orange.utils.
Marko Toplak
Removed the old version of obiKEGG. Renamed obiKEGG2 -> obiKEGG.
Marko Toplak
Fixes for obiGeneSets. Compatible files were generated and uploaded to SF.
Marko Toplak
Classes for storing gene set data moved to Orange.bio.geneset. obiGeneSets adapted to make new pickled classes.
Marko Toplak
Speed up of setsig (obiGeneSetSig).
mitar
Fixing some imports. Marking widgets as prototypes.
mitar
Restructuring because we will not be using namespaces.