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The Economist.com Style Guide says: indexes (of books), but indices (indicators, index numbers). You may find some entertainment googling "indexes or indices". Or not ;-)
Oops, that's from me.
What a nice topic :)
Most pages I found list the two plural forms as equivalent, and as someone who had nine years of Latin in school I much prefer the more original spelling... if you feel strongly about it please submit a patch ;)
With only five years of Latin, I shall bow to your erudition. I did once date a Latin teacher though.
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