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The workspace file format for version 1.14.0 and above uses XML. This allows extra information such as biosamples to be saved with the files. The format is demonstrated below.

#!xml

<?xml version = "1.0"?>
<workspace>
   <name>Example workspace</name>
   <datasets>
      <dataset>
         <path>/path/to/dataset1.nmd</path>
      </dataset>    
      <dataset>
         <path>C:\Path to\another dataset\test.nmd</path>
      </dataset>
      <dataset>
         <path>D:\path\to\final\dataset.nmd</path>
      </dataset>
   </datasets>
   <biosamples>
      <biosample name = "Wild type">
         <dataset>C:\Path to\another dataset\test.nmd</dataset>
         <dataset>D:\path\to\final\dataset.nmd</dataset>
      </biosample>
   </biosamples> 
</workspace>