This software is a wrapper for MuMRescueLite by Faulkner, G.J., et al. Bioinformatics (2009). The wrapper:
- accepts SAM/BAM input
- constructs the required input format required by MuMRescueLite
- runs MuMRescueLite
- outputs SAM/BAM file with the non-primary alignment reads from input removed
The MuMRescueLite.py script has also been converted to python3.