About this repository
This repository contains the codebase from RSeQC v2.6.4 as provided by the original authors that has been ported to python 3. It has only been tested against python 3.5. The code is not guaranteed to be backwards compatible with python 2.7, though this has not been tested. All credit and ownership is attributed to the original authors, I just made a few changes so that I can use it in my python3 workflow.
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc.
RSeQC is distributed under
GNU General Public License (GPLv3) <http://www.gnu.org/copyleft/gpl.html>_
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
- Wang, L., Wang, S., & Li, W. (2012). RSeQC: quality control of RNA-seq experiments. Bioinformatics (Oxford, England), 28(16), 2184–2185. http://doi.org/10.1093/bioinformatics/bts356
- Wang, L., Nie, J., Sicotte, H., Li, Y., Eckel-Passow, J. E., Dasari, S., et al. (2016). Measure transcript integrity using RNA-seq data. BMC Bioinformatics, 17(1), 1–16. http://doi.org/10.1186/s12859-016-0922-z