1. caodac
  2. kinome-viewer

Overview

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Kinome Tools and Components

This repository contains source code to the kinome Java component and related tools. A quick on-line demo of one of the tools is available here. To run this tool from source, you'll need Apache Ant.

ant kinome

A more customizable viewer is also available. To build the viewer, use the ant task viewer, i.e.,

ant viewer

This tools accepts CSV format of the form:

Compound,Gene,Activity
Compound 1,CLK1,10
Compound 1,CLK2,10
Compound 1,CLK4,10
Compound 1,CSNK1E,30
Compound 1,DYRK1A,10
Compound 1,MAP3K1,30
Compound 1,PRKCE,10
Compound 2,aak1,30
Compound 2,bike,10
Compound 2,clk1,30
Compound 2,clk2,10
Compound 2,clk4,30
Compound 2,dyrk1a,10
Compound 2,gak,30
Compound 2,lats1,30
Compound 2,pim1,30
Compound 2,pip5k1a,30
Compound 2,pip4k2b,30
Compound 2,riok3,30
Compound 2,srpk3,30

Here are a few screenshots of the tool:

wizard1 wizard2 viewer

Please forward questions and/or comments about the code and/or tools to nguyenda@mail.nih.gov.

Copyright

The original kinome dendrogram is available here.

Disclaimer

                     PUBLIC DOMAIN NOTICE
                 NIH Chemical Genomics Center
     National Center for Advancing Translational Sciences

This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the author's official duties as United States Government employee and thus cannot be copyrighted. This software is freely available to the public for use. The NIH Chemical Genomics Center (NCGC) and the U.S. Government have not placed any restriction on its use or reproduction.

Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NCGC and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NCGC and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose.

Please cite the authors in any work or product based on this material.