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Casey Dunn  committed 6064e31

reorganized quick install.

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     sudo easy_install pip
 
-Then install Agalma itself.
 
-On **Linux**:
-
-    sudo pip install agalma
-
-On **OS X**, we recommend installing to your user directory so you don't need sudo:
-
-    pip install --user agalma
+## Install dependencies
 
 Agalma has many dependencies on external programs. We recommend installing them using
 [Bioinformatics Brew](http://bib.bitbucket.org), a cross-platform package manager
 
     bib install -f macse/0.9b1 oma/0.99u.3
 
+## Install Agalma
+
+Install Agalma with pip.
+
+On **Linux**:
+
+    sudo pip install agalma
+
+On **OS X**, we recommend installing to your user directory so you don't need sudo:
+
+    pip install --user agalma
+
+## Test Agalma
+
 After installing, run the built-in test:
 
+    mkdir ~/tmp
+    cd ~/tmp
     agalma test
 
 This will check to see that your installation works. It runs through a series