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Casey Dunn committed f07d56c

added argument parser

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 # For projects using AC_CONFIG_AUX_DIR([foo]), Autoconf sets
-# $ac_aux_dir to '$srcdir/foo'.  In other projects, it is set to
-# '$srcdir', '$srcdir/..', or '$srcdir/../..'.
+# $ac_aux_dir to `$srcdir/foo'.  In other projects, it is set to
+# `$srcdir', `$srcdir/..', or `$srcdir/../..'.
 #
 # Of course, Automake must honor this variable whenever it calls a
 # tool from the auxiliary directory.  The problem is that $srcdir (and
 #
 # The reason of the latter failure is that $top_srcdir and $ac_aux_dir
 # are both prefixed by $srcdir.  In an in-source build this is usually
-# harmless because $srcdir is '.', but things will broke when you
+# harmless because $srcdir is `.', but things will broke when you
 # start a VPATH build or use an absolute $srcdir.
 #
 # So we could use something similar to $top_srcdir/$ac_aux_dir/missing,
 
 # Do all the work for Automake.                             -*- Autoconf -*-
 
-# Copyright (C) 1996-2013 Free Software Foundation, Inc.
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+# 2005, 2006, 2008, 2009 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 16
+
 # This macro actually does too much.  Some checks are only needed if
 # your package does certain things.  But this isn't really a big deal.
 
 # arguments mandatory, and then we can depend on a new Autoconf
 # release and drop the old call support.
 AC_DEFUN([AM_INIT_AUTOMAKE],
-[AC_PREREQ([2.65])dnl
+[AC_PREREQ([2.62])dnl
 dnl Autoconf wants to disallow AM_ names.  We explicitly allow
 dnl the ones we care about.
 m4_pattern_allow([^AM_[A-Z]+FLAGS$])dnl
 # Define the identity of the package.
 dnl Distinguish between old-style and new-style calls.
 m4_ifval([$2],
-[AC_DIAGNOSE([obsolete],
-             [$0: two- and three-arguments forms are deprecated.])
-m4_ifval([$3], [_AM_SET_OPTION([no-define])])dnl
+[m4_ifval([$3], [_AM_SET_OPTION([no-define])])dnl
  AC_SUBST([PACKAGE], [$1])dnl
  AC_SUBST([VERSION], [$2])],
 [_AM_SET_OPTIONS([$1])dnl
 dnl Diagnose old-style AC_INIT with new-style AM_AUTOMAKE_INIT.
-m4_if(
-  m4_ifdef([AC_PACKAGE_NAME], [ok]):m4_ifdef([AC_PACKAGE_VERSION], [ok]),
-  [ok:ok],,
+m4_if(m4_ifdef([AC_PACKAGE_NAME], 1)m4_ifdef([AC_PACKAGE_VERSION], 1), 11,,
   [m4_fatal([AC_INIT should be called with package and version arguments])])dnl
  AC_SUBST([PACKAGE], ['AC_PACKAGE_TARNAME'])dnl
  AC_SUBST([VERSION], ['AC_PACKAGE_VERSION'])])dnl
 
 _AM_IF_OPTION([no-define],,
-[AC_DEFINE_UNQUOTED([PACKAGE], ["$PACKAGE"], [Name of package])
- AC_DEFINE_UNQUOTED([VERSION], ["$VERSION"], [Version number of package])])dnl
+[AC_DEFINE_UNQUOTED(PACKAGE, "$PACKAGE", [Name of package])
+ AC_DEFINE_UNQUOTED(VERSION, "$VERSION", [Version number of package])])dnl
 
 # Some tools Automake needs.
 AC_REQUIRE([AM_SANITY_CHECK])dnl
 AC_REQUIRE([AC_ARG_PROGRAM])dnl
-AM_MISSING_PROG([ACLOCAL], [aclocal-${am__api_version}])
-AM_MISSING_PROG([AUTOCONF], [autoconf])
-AM_MISSING_PROG([AUTOMAKE], [automake-${am__api_version}])
-AM_MISSING_PROG([AUTOHEADER], [autoheader])
-AM_MISSING_PROG([MAKEINFO], [makeinfo])
+AM_MISSING_PROG(ACLOCAL, aclocal-${am__api_version})
+AM_MISSING_PROG(AUTOCONF, autoconf)
+AM_MISSING_PROG(AUTOMAKE, automake-${am__api_version})
+AM_MISSING_PROG(AUTOHEADER, autoheader)
+AM_MISSING_PROG(MAKEINFO, makeinfo)
 AC_REQUIRE([AM_PROG_INSTALL_SH])dnl
 AC_REQUIRE([AM_PROG_INSTALL_STRIP])dnl
-AC_REQUIRE([AC_PROG_MKDIR_P])dnl
-# For better backward compatibility.  To be removed once Automake 1.9.x
-# dies out for good.  For more background, see:
-# <http://lists.gnu.org/archive/html/automake/2012-07/msg00001.html>
-# <http://lists.gnu.org/archive/html/automake/2012-07/msg00014.html>
-AC_SUBST([mkdir_p], ['$(MKDIR_P)'])
+AC_REQUIRE([AM_PROG_MKDIR_P])dnl
 # We need awk for the "check" target.  The system "awk" is bad on
 # some platforms.
 AC_REQUIRE([AC_PROG_AWK])dnl
 			     [_AM_PROG_TAR([v7])])])
 _AM_IF_OPTION([no-dependencies],,
 [AC_PROVIDE_IFELSE([AC_PROG_CC],
-		  [_AM_DEPENDENCIES([CC])],
-		  [m4_define([AC_PROG_CC],
-			     m4_defn([AC_PROG_CC])[_AM_DEPENDENCIES([CC])])])dnl
+		  [_AM_DEPENDENCIES(CC)],
+		  [define([AC_PROG_CC],
+			  defn([AC_PROG_CC])[_AM_DEPENDENCIES(CC)])])dnl
 AC_PROVIDE_IFELSE([AC_PROG_CXX],
-		  [_AM_DEPENDENCIES([CXX])],
-		  [m4_define([AC_PROG_CXX],
-			     m4_defn([AC_PROG_CXX])[_AM_DEPENDENCIES([CXX])])])dnl
+		  [_AM_DEPENDENCIES(CXX)],
+		  [define([AC_PROG_CXX],
+			  defn([AC_PROG_CXX])[_AM_DEPENDENCIES(CXX)])])dnl
 AC_PROVIDE_IFELSE([AC_PROG_OBJC],
-		  [_AM_DEPENDENCIES([OBJC])],
-		  [m4_define([AC_PROG_OBJC],
-			     m4_defn([AC_PROG_OBJC])[_AM_DEPENDENCIES([OBJC])])])dnl
-AC_PROVIDE_IFELSE([AC_PROG_OBJCXX],
-		  [_AM_DEPENDENCIES([OBJCXX])],
-		  [m4_define([AC_PROG_OBJCXX],
-			     m4_defn([AC_PROG_OBJCXX])[_AM_DEPENDENCIES([OBJCXX])])])dnl
+		  [_AM_DEPENDENCIES(OBJC)],
+		  [define([AC_PROG_OBJC],
+			  defn([AC_PROG_OBJC])[_AM_DEPENDENCIES(OBJC)])])dnl
 ])
-AC_REQUIRE([AM_SILENT_RULES])dnl
-dnl The testsuite driver may need to know about EXEEXT, so add the
-dnl 'am__EXEEXT' conditional if _AM_COMPILER_EXEEXT was seen.  This
-dnl macro is hooked onto _AC_COMPILER_EXEEXT early, see below.
+_AM_IF_OPTION([silent-rules], [AC_REQUIRE([AM_SILENT_RULES])])dnl
+dnl The `parallel-tests' driver may need to know about EXEEXT, so add the
+dnl `am__EXEEXT' conditional if _AM_COMPILER_EXEEXT was seen.  This macro
+dnl is hooked onto _AC_COMPILER_EXEEXT early, see below.
 AC_CONFIG_COMMANDS_PRE(dnl
 [m4_provide_if([_AM_COMPILER_EXEEXT],
   [AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"])])])dnl
 ])
 
-dnl Hook into '_AC_COMPILER_EXEEXT' early to learn its expansion.  Do not
+dnl Hook into `_AC_COMPILER_EXEEXT' early to learn its expansion.  Do not
 dnl add the conditional right here, as _AC_COMPILER_EXEEXT may be further
 dnl mangled by Autoconf and run in a shell conditional statement.
 m4_define([_AC_COMPILER_EXEEXT],
 done
 echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count])
 
-# Copyright (C) 2001-2013 Free Software Foundation, Inc.
+# Copyright (C) 2001, 2003, 2005, 2008, 2011 Free Software Foundation,
+# Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 1
+
 # AM_PROG_INSTALL_SH
 # ------------------
 # Define $install_sh.
     install_sh="\${SHELL} $am_aux_dir/install-sh"
   esac
 fi
-AC_SUBST([install_sh])])
+AC_SUBST(install_sh)])
 
-# Copyright (C) 2003-2013 Free Software Foundation, Inc.
+# Copyright (C) 2003, 2005  Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 2
+
 # Check whether the underlying file-system supports filenames
 # with a leading dot.  For instance MS-DOS doesn't.
 AC_DEFUN([AM_SET_LEADING_DOT],
 
 # Fake the existence of programs that GNU maintainers use.  -*- Autoconf -*-
 
-# Copyright (C) 1997-2013 Free Software Foundation, Inc.
+# Copyright (C) 1997, 1999, 2000, 2001, 2003, 2004, 2005, 2008
+# Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 6
+
 # AM_MISSING_PROG(NAME, PROGRAM)
 # ------------------------------
 AC_DEFUN([AM_MISSING_PROG],
 $1=${$1-"${am_missing_run}$2"}
 AC_SUBST($1)])
 
+
 # AM_MISSING_HAS_RUN
 # ------------------
-# Define MISSING if not defined so far and test if it is modern enough.
-# If it is, set am_missing_run to use it, otherwise, to nothing.
+# Define MISSING if not defined so far and test if it supports --run.
+# If it does, set am_missing_run to use it, otherwise, to nothing.
 AC_DEFUN([AM_MISSING_HAS_RUN],
 [AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl
 AC_REQUIRE_AUX_FILE([missing])dnl
   esac
 fi
 # Use eval to expand $SHELL
-if eval "$MISSING --is-lightweight"; then
-  am_missing_run="$MISSING "
+if eval "$MISSING --run true"; then
+  am_missing_run="$MISSING --run "
 else
   am_missing_run=
-  AC_MSG_WARN(['missing' script is too old or missing])
+  AC_MSG_WARN([`missing' script is too old or missing])
 fi
 ])
 
+# Copyright (C) 2003, 2004, 2005, 2006, 2011 Free Software Foundation,
+# Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 1
+
+# AM_PROG_MKDIR_P
+# ---------------
+# Check for `mkdir -p'.
+AC_DEFUN([AM_PROG_MKDIR_P],
+[AC_PREREQ([2.60])dnl
+AC_REQUIRE([AC_PROG_MKDIR_P])dnl
+dnl Automake 1.8 to 1.9.6 used to define mkdir_p.  We now use MKDIR_P,
+dnl while keeping a definition of mkdir_p for backward compatibility.
+dnl @MKDIR_P@ is magic: AC_OUTPUT adjusts its value for each Makefile.
+dnl However we cannot define mkdir_p as $(MKDIR_P) for the sake of
+dnl Makefile.ins that do not define MKDIR_P, so we do our own
+dnl adjustment using top_builddir (which is defined more often than
+dnl MKDIR_P).
+AC_SUBST([mkdir_p], ["$MKDIR_P"])dnl
+case $mkdir_p in
+  [[\\/$]]* | ?:[[\\/]]*) ;;
+  */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;;
+esac
+])
+
 # Helper functions for option handling.                     -*- Autoconf -*-
 
-# Copyright (C) 2001-2013 Free Software Foundation, Inc.
+# Copyright (C) 2001, 2002, 2003, 2005, 2008, 2010 Free Software
+# Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 5
+
 # _AM_MANGLE_OPTION(NAME)
 # -----------------------
 AC_DEFUN([_AM_MANGLE_OPTION],
 # --------------------
 # Set option NAME.  Presently that only means defining a flag for this option.
 AC_DEFUN([_AM_SET_OPTION],
-[m4_define(_AM_MANGLE_OPTION([$1]), [1])])
+[m4_define(_AM_MANGLE_OPTION([$1]), 1)])
 
 # _AM_SET_OPTIONS(OPTIONS)
 # ------------------------
 AC_DEFUN([_AM_IF_OPTION],
 [m4_ifset(_AM_MANGLE_OPTION([$1]), [$2], [$3])])
 
-# Copyright (C) 1999-2013 Free Software Foundation, Inc.
+# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2008, 2009,
+# 2011 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 2
 
 # AM_PATH_PYTHON([MINIMUM-VERSION], [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
 # ---------------------------------------------------------------------------
   dnl Find a Python interpreter.  Python versions prior to 2.0 are not
   dnl supported. (2.0 was released on October 16, 2000).
   m4_define_default([_AM_PYTHON_INTERPRETER_LIST],
-[python python2 python3 python3.3 python3.2 python3.1 python3.0 python2.7 dnl
+[python python2 python3 python3.2 python3.1 python3.0 python2.7 dnl
  python2.6 python2.5 python2.4 python2.3 python2.2 python2.1 python2.0])
 
   AC_ARG_VAR([PYTHON], [the Python interpreter])
     dnl A version check is needed.
     if test -n "$PYTHON"; then
       # If the user set $PYTHON, use it and don't search something else.
-      AC_MSG_CHECKING([whether $PYTHON version is >= $1])
+      AC_MSG_CHECKING([whether $PYTHON version >= $1])
       AM_PYTHON_CHECK_VERSION([$PYTHON], [$1],
-			      [AC_MSG_RESULT([yes])],
-			      [AC_MSG_RESULT([no])
-			       AC_MSG_ERROR([Python interpreter is too old])])
+			      [AC_MSG_RESULT(yes)],
+			      [AC_MSG_ERROR(too old)])
       am_display_PYTHON=$PYTHON
     else
       # Otherwise, try each interpreter until we find one that satisfies
     [am_cv_python_platform=`$PYTHON -c "import sys; sys.stdout.write(sys.platform)"`])
   AC_SUBST([PYTHON_PLATFORM], [$am_cv_python_platform])
 
-  # Just factor out some code duplication.
-  am_python_setup_sysconfig="\
-import sys
-# Prefer sysconfig over distutils.sysconfig, for better compatibility
-# with python 3.x.  See automake bug#10227.
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-    import sysconfig
-except ImportError:
-    can_use_sysconfig = 0
-else:
-    can_use_sysconfig = 1
-# Can't use sysconfig in CPython 2.7, since it's broken in virtualenvs:
-# <https://github.com/pypa/virtualenv/issues/118>
-try:
-    from platform import python_implementation
-    if python_implementation() == 'CPython' and sys.version[[:3]] == '2.7':
-        can_use_sysconfig = 0
-except ImportError:
-    pass"
 
   dnl Set up 4 directories:
 
      else
        am_py_prefix=$prefix
      fi
-     am_cv_python_pythondir=`$PYTHON -c "
-$am_python_setup_sysconfig
-if can_use_sysconfig:
-    sitedir = sysconfig.get_path('purelib', vars={'base':'$am_py_prefix'})
-else:
-    from distutils import sysconfig
-    sitedir = sysconfig.get_python_lib(0, 0, prefix='$am_py_prefix')
-sys.stdout.write(sitedir)"`
+     am_cv_python_pythondir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(0,0,prefix='$am_py_prefix'))" 2>/dev/null`
      case $am_cv_python_pythondir in
      $am_py_prefix*)
        am__strip_prefix=`echo "$am_py_prefix" | sed 's|.|.|g'`
      else
        am_py_exec_prefix=$exec_prefix
      fi
-     am_cv_python_pyexecdir=`$PYTHON -c "
-$am_python_setup_sysconfig
-if can_use_sysconfig:
-    sitedir = sysconfig.get_path('platlib', vars={'platbase':'$am_py_prefix'})
-else:
-    from distutils import sysconfig
-    sitedir = sysconfig.get_python_lib(1, 0, prefix='$am_py_prefix')
-sys.stdout.write(sitedir)"`
+     am_cv_python_pyexecdir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(1,0,prefix='$am_py_exec_prefix'))" 2>/dev/null`
      case $am_cv_python_pyexecdir in
      $am_py_exec_prefix*)
        am__strip_prefix=`echo "$am_py_exec_prefix" | sed 's|.|.|g'`
 sys.exit(sys.hexversion < minverhex)"
   AS_IF([AM_RUN_LOG([$1 -c "$prog"])], [$3], [$4])])
 
-# Copyright (C) 2001-2013 Free Software Foundation, Inc.
+# Copyright (C) 2001, 2003, 2005, 2011 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 1
+
 # AM_RUN_LOG(COMMAND)
 # -------------------
 # Run COMMAND, save the exit status in ac_status, and log it.
 
 # Check to make sure that the build environment is sane.    -*- Autoconf -*-
 
-# Copyright (C) 1996-2013 Free Software Foundation, Inc.
+# Copyright (C) 1996, 1997, 2000, 2001, 2003, 2005, 2008
+# Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 5
+
 # AM_SANITY_CHECK
 # ---------------
 AC_DEFUN([AM_SANITY_CHECK],
 [AC_MSG_CHECKING([whether build environment is sane])
+# Just in case
+sleep 1
+echo timestamp > conftest.file
 # Reject unsafe characters in $srcdir or the absolute working directory
 # name.  Accept space and tab only in the latter.
 am_lf='
 esac
 case $srcdir in
   *[[\\\"\#\$\&\'\`$am_lf\ \	]]*)
-    AC_MSG_ERROR([unsafe srcdir value: '$srcdir']);;
+    AC_MSG_ERROR([unsafe srcdir value: `$srcdir']);;
 esac
 
-# Do 'set' in a subshell so we don't clobber the current shell's
+# Do `set' in a subshell so we don't clobber the current shell's
 # arguments.  Must try -L first in case configure is actually a
 # symlink; some systems play weird games with the mod time of symlinks
 # (eg FreeBSD returns the mod time of the symlink's containing
 # directory).
 if (
-   am_has_slept=no
-   for am_try in 1 2; do
-     echo "timestamp, slept: $am_has_slept" > conftest.file
-     set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
-     if test "$[*]" = "X"; then
-	# -L didn't work.
-	set X `ls -t "$srcdir/configure" conftest.file`
-     fi
-     if test "$[*]" != "X $srcdir/configure conftest.file" \
-	&& test "$[*]" != "X conftest.file $srcdir/configure"; then
-
-	# If neither matched, then we have a broken ls.  This can happen
-	# if, for instance, CONFIG_SHELL is bash and it inherits a
-	# broken ls alias from the environment.  This has actually
-	# happened.  Such a system could not be considered "sane".
-	AC_MSG_ERROR([ls -t appears to fail.  Make sure there is not a broken
-  alias in your environment])
-     fi
-     if test "$[2]" = conftest.file || test $am_try -eq 2; then
-       break
-     fi
-     # Just in case.
-     sleep 1
-     am_has_slept=yes
-   done
+   set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
+   if test "$[*]" = "X"; then
+      # -L didn't work.
+      set X `ls -t "$srcdir/configure" conftest.file`
+   fi
+   rm -f conftest.file
+   if test "$[*]" != "X $srcdir/configure conftest.file" \
+      && test "$[*]" != "X conftest.file $srcdir/configure"; then
+
+      # If neither matched, then we have a broken ls.  This can happen
+      # if, for instance, CONFIG_SHELL is bash and it inherits a
+      # broken ls alias from the environment.  This has actually
+      # happened.  Such a system could not be considered "sane".
+      AC_MSG_ERROR([ls -t appears to fail.  Make sure there is not a broken
+alias in your environment])
+   fi
+
    test "$[2]" = conftest.file
    )
 then
    AC_MSG_ERROR([newly created file is older than distributed files!
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 fi
-AC_MSG_RESULT([yes])
-# If we didn't sleep, we still need to ensure time stamps of config.status and
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-am_sleep_pid=
-if grep 'slept: no' conftest.file >/dev/null 2>&1; then
-  ( sleep 1 ) &
-  am_sleep_pid=$!
-fi
-AC_CONFIG_COMMANDS_PRE(
-  [AC_MSG_CHECKING([that generated files are newer than configure])
-   if test -n "$am_sleep_pid"; then
-     # Hide warnings about reused PIDs.
-     wait $am_sleep_pid 2>/dev/null
-   fi
-   AC_MSG_RESULT([done])])
-rm -f conftest.file
-])
+AC_MSG_RESULT(yes)])
 
-# Copyright (C) 2009-2013 Free Software Foundation, Inc.
+# Copyright (C) 2001, 2003, 2005, 2011 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
-# AM_SILENT_RULES([DEFAULT])
-# --------------------------
-# Enable less verbose build rules; with the default set to DEFAULT
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-AC_DEFUN([AM_SILENT_RULES],
-[AC_ARG_ENABLE([silent-rules], [dnl
-AS_HELP_STRING(
-  [--enable-silent-rules],
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-AS_HELP_STRING(
-  [--disable-silent-rules],
-  [verbose build output (undo: "make V=0")])dnl
-])
-case $enable_silent_rules in @%:@ (((
-  yes) AM_DEFAULT_VERBOSITY=0;;
-   no) AM_DEFAULT_VERBOSITY=1;;
-    *) AM_DEFAULT_VERBOSITY=m4_if([$1], [yes], [0], [1]);;
-esac
-dnl
-dnl A few 'make' implementations (e.g., NonStop OS and NextStep)
-dnl do not support nested variable expansions.
-dnl See automake bug#9928 and bug#10237.
-am_make=${MAKE-make}
-AC_CACHE_CHECK([whether $am_make supports nested variables],
-   [am_cv_make_support_nested_variables],
-   [if AS_ECHO([['TRUE=$(BAR$(V))
-BAR0=false
-BAR1=true
-V=1
-am__doit:
-	@$(TRUE)
-.PHONY: am__doit']]) | $am_make -f - >/dev/null 2>&1; then
-  am_cv_make_support_nested_variables=yes
-else
-  am_cv_make_support_nested_variables=no
-fi])
-if test $am_cv_make_support_nested_variables = yes; then
-  dnl Using '$V' instead of '$(V)' breaks IRIX make.
-  AM_V='$(V)'
-  AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
-else
-  AM_V=$AM_DEFAULT_VERBOSITY
-  AM_DEFAULT_V=$AM_DEFAULT_VERBOSITY
-fi
-AC_SUBST([AM_V])dnl
-AM_SUBST_NOTMAKE([AM_V])dnl
-AC_SUBST([AM_DEFAULT_V])dnl
-AM_SUBST_NOTMAKE([AM_DEFAULT_V])dnl
-AC_SUBST([AM_DEFAULT_VERBOSITY])dnl
-AM_BACKSLASH='\'
-AC_SUBST([AM_BACKSLASH])dnl
-_AM_SUBST_NOTMAKE([AM_BACKSLASH])dnl
-])
-
-# Copyright (C) 2001-2013 Free Software Foundation, Inc.
-#
-# This file is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
+# serial 1
 
 # AM_PROG_INSTALL_STRIP
 # ---------------------
-# One issue with vendor 'install' (even GNU) is that you can't
+# One issue with vendor `install' (even GNU) is that you can't
 # specify the program used to strip binaries.  This is especially
 # annoying in cross-compiling environments, where the build's strip
 # is unlikely to handle the host's binaries.
 # Fortunately install-sh will honor a STRIPPROG variable, so we
-# always use install-sh in "make install-strip", and initialize
+# always use install-sh in `make install-strip', and initialize
 # STRIPPROG with the value of the STRIP variable (set by the user).
 AC_DEFUN([AM_PROG_INSTALL_STRIP],
 [AC_REQUIRE([AM_PROG_INSTALL_SH])dnl
-# Installed binaries are usually stripped using 'strip' when the user
-# run "make install-strip".  However 'strip' might not be the right
+# Installed binaries are usually stripped using `strip' when the user
+# run `make install-strip'.  However `strip' might not be the right
 # tool to use in cross-compilation environments, therefore Automake
-# will honor the 'STRIP' environment variable to overrule this program.
-dnl Don't test for $cross_compiling = yes, because it might be 'maybe'.
+# will honor the `STRIP' environment variable to overrule this program.
+dnl Don't test for $cross_compiling = yes, because it might be `maybe'.
 if test "$cross_compiling" != no; then
   AC_CHECK_TOOL([STRIP], [strip], :)
 fi
 INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s"
 AC_SUBST([INSTALL_STRIP_PROGRAM])])
 
-# Copyright (C) 2006-2013 Free Software Foundation, Inc.
+# Copyright (C) 2006, 2008, 2010 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 3
+
 # _AM_SUBST_NOTMAKE(VARIABLE)
 # ---------------------------
 # Prevent Automake from outputting VARIABLE = @VARIABLE@ in Makefile.in.
 
 # Check how to create a tarball.                            -*- Autoconf -*-
 
-# Copyright (C) 2004-2013 Free Software Foundation, Inc.
+# Copyright (C) 2004, 2005, 2012 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
+# serial 2
+
 # _AM_PROG_TAR(FORMAT)
 # --------------------
 # Check how to create a tarball in format FORMAT.
-# FORMAT should be one of 'v7', 'ustar', or 'pax'.
+# FORMAT should be one of `v7', `ustar', or `pax'.
 #
 # Substitute a variable $(am__tar) that is a command
 # writing to stdout a FORMAT-tarball containing the directory
 # Substitute a variable $(am__untar) that extract such
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 #     $(am__untar) < result.tar
-#
 AC_DEFUN([_AM_PROG_TAR],
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-
-# We'll loop over all known methods to create a tar archive until one works.
+m4_if([$1], [v7],
+     [am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -'],
+     [m4_case([$1], [ustar],, [pax],,
+              [m4_fatal([Unknown tar format])])
+AC_MSG_CHECKING([how to create a $1 tar archive])
+# Loop over all known methods to create a tar archive until one works.
 _am_tools='gnutar m4_if([$1], [ustar], [plaintar]) pax cpio none'
+_am_tools=${am_cv_prog_tar_$1-$_am_tools}
+# Do not fold the above two line into one, because Tru64 sh and
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+do
+  case $_am_tool in
+  gnutar)
+    for _am_tar in tar gnutar gtar;
+    do
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+    am__tar="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$$tardir"'
+    am__tar_="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$tardir"'
+    am__untar="$_am_tar -xf -"
+    ;;
+  plaintar)
+    # Must skip GNU tar: if it does not support --format= it doesn't create
+    # ustar tarball either.
+    (tar --version) >/dev/null 2>&1 && continue
+    am__tar='tar chf - "$$tardir"'
+    am__tar_='tar chf - "$tardir"'
+    am__untar='tar xf -'
+    ;;
+  pax)
+    am__tar='pax -L -x $1 -w "$$tardir"'
+    am__tar_='pax -L -x $1 -w "$tardir"'
+    am__untar='pax -r'
+    ;;
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+    am__tar_='find "$tardir" -print | cpio -o -H $1 -L'
+    am__untar='cpio -i -H $1 -d'
+    ;;
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-      grep GrepMe conftest.dir/file >/dev/null 2>&1 && break
-    fi
-  done
-  rm -rf conftest.dir
+  # If the value was cached, stop now.  We just wanted to have am__tar
+  # and am__untar set.
+  test -n "${am_cv_prog_tar_$1}" && break
 
-  AC_CACHE_VAL([am_cv_prog_tar_$1], [am_cv_prog_tar_$1=$_am_tool])
-  AC_MSG_RESULT([$am_cv_prog_tar_$1])])
+  # tar/untar a dummy directory, and stop if the command works
+  rm -rf conftest.dir
+  mkdir conftest.dir
+  echo GrepMe > conftest.dir/file
+  AM_RUN_LOG([tardir=conftest.dir && eval $am__tar_ >conftest.tar])
+  rm -rf conftest.dir
+  if test -s conftest.tar; then
+    AM_RUN_LOG([$am__untar <conftest.tar])
+    grep GrepMe conftest.dir/file >/dev/null 2>&1 && break
+  fi
+done
+rm -rf conftest.dir
 
+AC_CACHE_VAL([am_cv_prog_tar_$1], [am_cv_prog_tar_$1=$_am_tool])
+AC_MSG_RESULT([$am_cv_prog_tar_$1])])
 AC_SUBST([am__tar])
 AC_SUBST([am__untar])
 ]) # _AM_PROG_TAR

agalma/Makefile.in

-# Makefile.in generated by automake 1.13.2 from Makefile.am.
+# Makefile.in generated by automake 1.11.6 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
-
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011 Free Software
+# Foundation, Inc.
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 @SET_MAKE@
 
 VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
-am__make_running_with_option = \
-  case $${target_option-} in \
-      ?) ;; \
-      *) echo "am__make_running_with_option: internal error: invalid" \
-              "target option '$${target_option-}' specified" >&2; \
-         exit 1;; \
-  esac; \
-  has_opt=no; \
-  sane_makeflags=$$MAKEFLAGS; \
-  if $(am__is_gnu_make); then \
-    sane_makeflags=$$MFLAGS; \
-  else \
+am__make_dryrun = \
+  { \
+    am__dry=no; \
     case $$MAKEFLAGS in \
       *\\[\ \	]*) \
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-        sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \
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-  skip_next=no; \
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-      *=*|--*) continue;; \
-        -*I) strip_trailopt 'I'; skip_next=yes;; \
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-      -[JT]) skip_next=yes;; \
-    esac; \
-    case $$flg in \
-      *$$target_option*) has_opt=yes; break;; \
+        echo 'am--echo: ; @echo "AM"  OK' | $(MAKE) -f - 2>/dev/null \
+          | grep '^AM OK$$' >/dev/null || am__dry=yes;; \
+      *) \
+        for am__flg in $$MAKEFLAGS; do \
+          case $$am__flg in \
+            *=*|--*) ;; \
+            *n*) am__dry=yes; break;; \
+          esac; \
+        done;; \
     esac; \
-  done; \
-  test $$has_opt = yes
-am__make_dryrun = (target_option=n; $(am__make_running_with_option))
-am__make_keepgoing = (target_option=k; $(am__make_running_with_option))
+    test $$am__dry = yes; \
+  }
 pkgdatadir = $(datadir)/@PACKAGE@
 pkgincludedir = $(includedir)/@PACKAGE@
 pkglibdir = $(libdir)/@PACKAGE@
 build_triplet = @build@
 host_triplet = @host@
 subdir = agalma
-DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am \
-	$(srcdir)/agalma.in $(pkgpython_PYTHON) \
-	$(top_srcdir)/py-compile
+DIST_COMMON = $(pkgpython_PYTHON) $(srcdir)/Makefile.am \
+	$(srcdir)/Makefile.in $(srcdir)/agalma.in
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/ac_define_dir.m4 \
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   }
 am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(pkgpythondir)"
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-AM_V_P = $(am__v_P_@AM_V@)
-am__v_P_ = $(am__v_P_@AM_DEFAULT_V@)
-am__v_P_0 = false
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 	if test -n "$$dlist"; then \
-	  $(am__py_compile) --destdir "$(DESTDIR)" \
-	                    --basedir "$(pkgpythondir)" $$dlist; \
+	  if test -z "$(DESTDIR)"; then \
+	    $(am__py_compile) --basedir "$(pkgpythondir)" $$dlist; \
+	  else \
+	    $(am__py_compile) --destdir "$(DESTDIR)" \
+	                      --basedir "$(pkgpythondir)" $$dlist; \
+	  fi; \
 	else :; fi
 
 uninstall-pkgpythonPYTHON:
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 	@list='$(pkgpython_PYTHON)'; test -n "$(pkgpythondir)" || list=; \
-	py_files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
-	test -n "$$py_files" || exit 0; \
+	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
+	test -n "$$files" || exit 0; \
 	dir='$(DESTDIR)$(pkgpythondir)'; \
-	pyc_files=`echo "$$py_files" | sed 's|$$|c|'`; \
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-	pyo_files_pep3147=`echo "$$py_files_pep3147" | sed 's|$$|o|'`; \
+	filesc=`echo "$$files" | sed 's|$$|c|'`; \
+	fileso=`echo "$$files" | sed 's|$$|o|'`; \
 	st=0; \
-	for files in \
-	  "$$py_files" \
-	  "$$pyc_files" \
-	  "$$pyo_files" \
-	  "$$pyc_files_pep3147" \
-	  "$$pyo_files_pep3147" \
-	; do \
+	for files in "$$files" "$$filesc" "$$fileso"; do \
 	  $(am__uninstall_files_from_dir) || st=$$?; \
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 	exit $$st
-tags TAGS:
-
-ctags CTAGS:
+tags: TAGS
+TAGS:
 
-cscope cscopelist:
+ctags: CTAGS
+CTAGS:
 
 
 distdir: $(DISTFILES)
 
 .MAKE: install-am install-strip
 
-.PHONY: all all-am check check-am clean clean-generic cscopelist-am \
-	ctags-am distclean distclean-generic distdir dvi dvi-am html \
-	html-am info info-am install install-am install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-nodist_binSCRIPTS \
-	install-pdf install-pdf-am install-pkgpythonPYTHON install-ps \
-	install-ps-am install-strip installcheck installcheck-am \
-	installdirs maintainer-clean maintainer-clean-generic \
-	mostlyclean mostlyclean-generic pdf pdf-am ps ps-am tags-am \
-	uninstall uninstall-am uninstall-nodist_binSCRIPTS \
-	uninstall-pkgpythonPYTHON
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-data install-data-am install-dvi \
+	install-dvi-am install-exec install-exec-am install-html \
+	install-html-am install-info install-info-am install-man \
+	install-nodist_binSCRIPTS install-pdf install-pdf-am \
+	install-pkgpythonPYTHON install-ps install-ps-am install-strip \
+	installcheck installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am \
+	uninstall-nodist_binSCRIPTS uninstall-pkgpythonPYTHON
 
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.

agalma/genetree.py

 import glob
 import os
 
+from dendropy import Tree
+
 from Bio import AlignIO
 
 from biolite import diagnostics
 pipe.add_argument('raxml_flags', default=None, help="""
 	Extra parameters to pass to RAxML. Make sure the flags make sense: refer to
 	the RAxML Manual for help.""")
-
+pipe.add_argument('min_bootstrap', short='b', type=float, default=0, help="""
+	Filter out trees with mean bootstrap below min_bootstrap.""")
 
 # Pipeline stages
 @pipe.stage

autom4te.cache/output.0

 build_vendor
 build_cpu
 build
-AM_BACKSLASH
-AM_DEFAULT_VERBOSITY
-AM_DEFAULT_V
-AM_V
 am__untar
 am__tar
 AMTAR
 ac_subst_files=''
 ac_user_opts='
 enable_option_checking
-enable_silent_rules
 '
       ac_precious_vars='build_alias
 host_alias
    esac
   cat <<\_ACEOF
 
-Optional Features:
-  --disable-option-checking  ignore unrecognized --enable/--with options
-  --disable-FEATURE       do not include FEATURE (same as --enable-FEATURE=no)
-  --enable-FEATURE[=ARG]  include FEATURE [ARG=yes]
-  --enable-silent-rules   less verbose build output (undo: "make V=1")
-  --disable-silent-rules  verbose build output (undo: "make V=0")
-
 Some influential environment variables:
   PYTHON      the Python interpreter
 
 
 
 
-am__api_version='1.13'
+am__api_version='1.11'
 
 ac_aux_dir=
 for ac_dir in "$srcdir" "$srcdir/.." "$srcdir/../.."; do
 
 { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether build environment is sane" >&5
 $as_echo_n "checking whether build environment is sane... " >&6; }
+# Just in case
+sleep 1
+echo timestamp > conftest.file
 # Reject unsafe characters in $srcdir or the absolute working directory
 # name.  Accept space and tab only in the latter.
 am_lf='
 esac
 case $srcdir in
   *[\\\"\#\$\&\'\`$am_lf\ \	]*)
-    as_fn_error $? "unsafe srcdir value: '$srcdir'" "$LINENO" 5;;
+    as_fn_error $? "unsafe srcdir value: \`$srcdir'" "$LINENO" 5;;
 esac
 
-# Do 'set' in a subshell so we don't clobber the current shell's
+# Do `set' in a subshell so we don't clobber the current shell's
 # arguments.  Must try -L first in case configure is actually a
 # symlink; some systems play weird games with the mod time of symlinks
 # (eg FreeBSD returns the mod time of the symlink's containing
 # directory).
 if (
-   am_has_slept=no
-   for am_try in 1 2; do
-     echo "timestamp, slept: $am_has_slept" > conftest.file
-     set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
-     if test "$*" = "X"; then
-	# -L didn't work.
-	set X `ls -t "$srcdir/configure" conftest.file`
-     fi
-     if test "$*" != "X $srcdir/configure conftest.file" \
-	&& test "$*" != "X conftest.file $srcdir/configure"; then
-
-	# If neither matched, then we have a broken ls.  This can happen
-	# if, for instance, CONFIG_SHELL is bash and it inherits a
-	# broken ls alias from the environment.  This has actually
-	# happened.  Such a system could not be considered "sane".
-	as_fn_error $? "ls -t appears to fail.  Make sure there is not a broken
-  alias in your environment" "$LINENO" 5
-     fi
-     if test "$2" = conftest.file || test $am_try -eq 2; then
-       break
-     fi
-     # Just in case.
-     sleep 1
-     am_has_slept=yes
-   done
+   set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
+   if test "$*" = "X"; then
+      # -L didn't work.
+      set X `ls -t "$srcdir/configure" conftest.file`
+   fi
+   rm -f conftest.file
+   if test "$*" != "X $srcdir/configure conftest.file" \
+      && test "$*" != "X conftest.file $srcdir/configure"; then
+
+      # If neither matched, then we have a broken ls.  This can happen
+      # if, for instance, CONFIG_SHELL is bash and it inherits a
+      # broken ls alias from the environment.  This has actually
+      # happened.  Such a system could not be considered "sane".
+      as_fn_error $? "ls -t appears to fail.  Make sure there is not a broken
+alias in your environment" "$LINENO" 5
+   fi
+
    test "$2" = conftest.file
    )
 then
 fi
 { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
 $as_echo "yes" >&6; }
-# If we didn't sleep, we still need to ensure time stamps of config.status and
-# generated files are strictly newer.
-am_sleep_pid=
-if grep 'slept: no' conftest.file >/dev/null 2>&1; then
-  ( sleep 1 ) &
-  am_sleep_pid=$!
-fi
-
-rm -f conftest.file
-
 test "$program_prefix" != NONE &&
   program_transform_name="s&^&$program_prefix&;$program_transform_name"
 # Use a double $ so make ignores it.
   esac
 fi
 # Use eval to expand $SHELL
-if eval "$MISSING --is-lightweight"; then
-  am_missing_run="$MISSING "
+if eval "$MISSING --run true"; then
+  am_missing_run="$MISSING --run "
 else
   am_missing_run=
-  { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: 'missing' script is too old or missing" >&5
-$as_echo "$as_me: WARNING: 'missing' script is too old or missing" >&2;}
+  { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: \`missing' script is too old or missing" >&5
+$as_echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;}
 fi
 
 if test x"${install_sh}" != xset; then
   esac
 fi
 
-# Installed binaries are usually stripped using 'strip' when the user
-# run "make install-strip".  However 'strip' might not be the right
+# Installed binaries are usually stripped using `strip' when the user
+# run `make install-strip'.  However `strip' might not be the right
 # tool to use in cross-compilation environments, therefore Automake
-# will honor the 'STRIP' environment variable to overrule this program.
+# will honor the `STRIP' environment variable to overrule this program.
 if test "$cross_compiling" != no; then
   if test -n "$ac_tool_prefix"; then
   # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.
 { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MKDIR_P" >&5
 $as_echo "$MKDIR_P" >&6; }
 
+mkdir_p="$MKDIR_P"
+case $mkdir_p in
+  [\\/$]* | ?:[\\/]*) ;;
+  */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;;
+esac
+
 for ac_prog in gawk mawk nawk awk
 do
   # Extract the first word of "$ac_prog", so it can be a program name with args.
 fi
 rmdir .tst 2>/dev/null
 
-@%:@ Check whether --enable-silent-rules was given.
-if test "${enable_silent_rules+set}" = set; then :
-  enableval=$enable_silent_rules; 
-fi
-
-case $enable_silent_rules in @%:@ (((
-  yes) AM_DEFAULT_VERBOSITY=0;;
-   no) AM_DEFAULT_VERBOSITY=1;;
-    *) AM_DEFAULT_VERBOSITY=1;;
-esac
-am_make=${MAKE-make}
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $am_make supports nested variables" >&5
-$as_echo_n "checking whether $am_make supports nested variables... " >&6; }
-if ${am_cv_make_support_nested_variables+:} false; then :
-  $as_echo_n "(cached) " >&6
-else
-  if $as_echo 'TRUE=$(BAR$(V))
-BAR0=false
-BAR1=true
-V=1
-am__doit:
-	@$(TRUE)
-.PHONY: am__doit' | $am_make -f - >/dev/null 2>&1; then
-  am_cv_make_support_nested_variables=yes
-else
-  am_cv_make_support_nested_variables=no
-fi
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_make_support_nested_variables" >&5
-$as_echo "$am_cv_make_support_nested_variables" >&6; }
-if test $am_cv_make_support_nested_variables = yes; then
-    AM_V='$(V)'
-  AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
-else
-  AM_V=$AM_DEFAULT_VERBOSITY
-  AM_DEFAULT_V=$AM_DEFAULT_VERBOSITY
-fi
-AM_BACKSLASH='\'
-
 if test "`cd $srcdir && pwd`" != "`pwd`"; then
   # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
   # is not polluted with repeated "-I."
 
 MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"}
 
-# For better backward compatibility.  To be removed once Automake 1.9.x
-# dies out for good.  For more background, see:
-# <http://lists.gnu.org/archive/html/automake/2012-07/msg00001.html>
-# <http://lists.gnu.org/archive/html/automake/2012-07/msg00014.html>
-mkdir_p='$(MKDIR_P)'
-
 # We need awk for the "check" target.  The system "awk" is bad on
 # some platforms.
 # Always define AMTAR for backward compatibility.  Yes, it's still used
 # in the wild :-(  We should find a proper way to deprecate it ...
 AMTAR='$${TAR-tar}'
 
-
-# We'll loop over all known methods to create a tar archive until one works.
-_am_tools='gnutar  pax cpio none'
-
 am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -'
 
 
 
 
 
-
 # Make sure we can run config.sub.
 $SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
   as_fn_error $? "cannot run $SHELL $ac_aux_dir/config.sub" "$LINENO" 5
   
         if test -n "$PYTHON"; then
       # If the user set $PYTHON, use it and don't search something else.
-      { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $PYTHON version is >= 2.7" >&5
-$as_echo_n "checking whether $PYTHON version is >= 2.7... " >&6; }
+      { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $PYTHON version >= 2.7" >&5
+$as_echo_n "checking whether $PYTHON version >= 2.7... " >&6; }
       prog="import sys
 # split strings by '.' and convert to numeric.  Append some zeros
 # because we need at least 4 digits for the hex conversion.
   { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
 $as_echo "yes" >&6; }
 else
-  { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
-$as_echo "no" >&6; }
-			       as_fn_error $? "Python interpreter is too old" "$LINENO" 5
+  as_fn_error $? "too old" "$LINENO" 5
 fi
       am_display_PYTHON=$PYTHON
     else
   $as_echo_n "(cached) " >&6
 else
   
-	for am_cv_pathless_PYTHON in python python2 python3 python3.3 python3.2 python3.1 python3.0 python2.7  python2.6 python2.5 python2.4 python2.3 python2.2 python2.1 python2.0 none; do
+	for am_cv_pathless_PYTHON in python python2 python3 python3.2 python3.1 python3.0 python2.7  python2.6 python2.5 python2.4 python2.3 python2.2 python2.1 python2.0 none; do
 	  test "$am_cv_pathless_PYTHON" = none && break
 	  prog="import sys
 # split strings by '.' and convert to numeric.  Append some zeros
   PYTHON_PLATFORM=$am_cv_python_platform
 
 
-  # Just factor out some code duplication.
-  am_python_setup_sysconfig="\
-import sys
-# Prefer sysconfig over distutils.sysconfig, for better compatibility
-# with python 3.x.  See automake bug#10227.
-try:
-    import sysconfig
-except ImportError:
-    can_use_sysconfig = 0
-else:
-    can_use_sysconfig = 1
-# Can't use sysconfig in CPython 2.7, since it's broken in virtualenvs:
-# <https://github.com/pypa/virtualenv/issues/118>
-try:
-    from platform import python_implementation
-    if python_implementation() == 'CPython' and sys.version[:3] == '2.7':
-        can_use_sysconfig = 0
-except ImportError:
-    pass"
 
   
             { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $am_display_PYTHON script directory" >&5
      else
        am_py_prefix=$prefix
      fi
-     am_cv_python_pythondir=`$PYTHON -c "
-$am_python_setup_sysconfig
-if can_use_sysconfig:
-    sitedir = sysconfig.get_path('purelib', vars={'base':'$am_py_prefix'})
-else:
-    from distutils import sysconfig
-    sitedir = sysconfig.get_python_lib(0, 0, prefix='$am_py_prefix')
-sys.stdout.write(sitedir)"`
+     am_cv_python_pythondir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(0,0,prefix='$am_py_prefix'))" 2>/dev/null`
      case $am_cv_python_pythondir in
      $am_py_prefix*)
        am__strip_prefix=`echo "$am_py_prefix" | sed 's|.|.|g'`
      else
        am_py_exec_prefix=$exec_prefix
      fi
-     am_cv_python_pyexecdir=`$PYTHON -c "
-$am_python_setup_sysconfig
-if can_use_sysconfig:
-    sitedir = sysconfig.get_path('platlib', vars={'platbase':'$am_py_prefix'})
-else:
-    from distutils import sysconfig
-    sitedir = sysconfig.get_python_lib(1, 0, prefix='$am_py_prefix')
-sys.stdout.write(sitedir)"`
+     am_cv_python_pyexecdir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(1,0,prefix='$am_py_exec_prefix'))" 2>/dev/null`
      case $am_cv_python_pyexecdir in
      $am_py_exec_prefix*)
        am__strip_prefix=`echo "$am_py_exec_prefix" | sed 's|.|.|g'`
 LTLIBOBJS=$ac_ltlibobjs
 
 
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking that generated files are newer than configure" >&5
-$as_echo_n "checking that generated files are newer than configure... " >&6; }
-   if test -n "$am_sleep_pid"; then
-     # Hide warnings about reused PIDs.
-     wait $am_sleep_pid 2>/dev/null
-   fi
-   { $as_echo "$as_me:${as_lineno-$LINENO}: result: done" >&5
-$as_echo "done" >&6; }
 
 
 : "${CONFIG_STATUS=./config.status}"

autom4te.cache/output.1

 build_vendor
 build_cpu
 build
-AM_BACKSLASH
-AM_DEFAULT_VERBOSITY
-AM_DEFAULT_V
-AM_V
 am__untar
 am__tar
 AMTAR
 ac_subst_files=''
 ac_user_opts='
 enable_option_checking
-enable_silent_rules
 '
       ac_precious_vars='build_alias
 host_alias
    esac
   cat <<\_ACEOF
 
-Optional Features:
-  --disable-option-checking  ignore unrecognized --enable/--with options
-  --disable-FEATURE       do not include FEATURE (same as --enable-FEATURE=no)
-  --enable-FEATURE[=ARG]  include FEATURE [ARG=yes]
-  --enable-silent-rules   less verbose build output (undo: "make V=1")
-  --disable-silent-rules  verbose build output (undo: "make V=0")
-
 Some influential environment variables:
   PYTHON      the Python interpreter
 
 
 
 
-am__api_version='1.13'
+am__api_version='1.11'
 
 ac_aux_dir=
 for ac_dir in "$srcdir" "$srcdir/.." "$srcdir/../.."; do
 
 { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether build environment is sane" >&5
 $as_echo_n "checking whether build environment is sane... " >&6; }
+# Just in case
+sleep 1
+echo timestamp > conftest.file
 # Reject unsafe characters in $srcdir or the absolute working directory
 # name.  Accept space and tab only in the latter.
 am_lf='
 esac
 case $srcdir in
   *[\\\"\#\$\&\'\`$am_lf\ \	]*)
-    as_fn_error $? "unsafe srcdir value: '$srcdir'" "$LINENO" 5;;
+    as_fn_error $? "unsafe srcdir value: \`$srcdir'" "$LINENO" 5;;
 esac
 
-# Do 'set' in a subshell so we don't clobber the current shell's
+# Do `set' in a subshell so we don't clobber the current shell's
 # arguments.  Must try -L first in case configure is actually a
 # symlink; some systems play weird games with the mod time of symlinks
 # (eg FreeBSD returns the mod time of the symlink's containing
 # directory).
 if (
-   am_has_slept=no
-   for am_try in 1 2; do
-     echo "timestamp, slept: $am_has_slept" > conftest.file
-     set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
-     if test "$*" = "X"; then
-	# -L didn't work.
-	set X `ls -t "$srcdir/configure" conftest.file`
-     fi
-     if test "$*" != "X $srcdir/configure conftest.file" \
-	&& test "$*" != "X conftest.file $srcdir/configure"; then
-
-	# If neither matched, then we have a broken ls.  This can happen
-	# if, for instance, CONFIG_SHELL is bash and it inherits a
-	# broken ls alias from the environment.  This has actually
-	# happened.  Such a system could not be considered "sane".
-	as_fn_error $? "ls -t appears to fail.  Make sure there is not a broken
-  alias in your environment" "$LINENO" 5
-     fi
-     if test "$2" = conftest.file || test $am_try -eq 2; then
-       break
-     fi
-     # Just in case.
-     sleep 1
-     am_has_slept=yes
-   done
+   set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
+   if test "$*" = "X"; then
+      # -L didn't work.
+      set X `ls -t "$srcdir/configure" conftest.file`
+   fi
+   rm -f conftest.file
+   if test "$*" != "X $srcdir/configure conftest.file" \
+      && test "$*" != "X conftest.file $srcdir/configure"; then
+
+      # If neither matched, then we have a broken ls.  This can happen
+      # if, for instance, CONFIG_SHELL is bash and it inherits a
+      # broken ls alias from the environment.  This has actually
+      # happened.  Such a system could not be considered "sane".
+      as_fn_error $? "ls -t appears to fail.  Make sure there is not a broken
+alias in your environment" "$LINENO" 5
+   fi
+
    test "$2" = conftest.file
    )
 then
 fi
 { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
 $as_echo "yes" >&6; }
-# If we didn't sleep, we still need to ensure time stamps of config.status and
-# generated files are strictly newer.
-am_sleep_pid=
-if grep 'slept: no' conftest.file >/dev/null 2>&1; then
-  ( sleep 1 ) &
-  am_sleep_pid=$!
-fi
-
-rm -f conftest.file
-
 test "$program_prefix" != NONE &&
   program_transform_name="s&^&$program_prefix&;$program_transform_name"
 # Use a double $ so make ignores it.
   esac
 fi
 # Use eval to expand $SHELL
-if eval "$MISSING --is-lightweight"; then
-  am_missing_run="$MISSING "
+if eval "$MISSING --run true"; then
+  am_missing_run="$MISSING --run "
 else
   am_missing_run=
-  { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: 'missing' script is too old or missing" >&5
-$as_echo "$as_me: WARNING: 'missing' script is too old or missing" >&2;}
+  { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: \`missing' script is too old or missing" >&5
+$as_echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;}
 fi
 
 if test x"${install_sh}" != xset; then
   esac
 fi
 
-# Installed binaries are usually stripped using 'strip' when the user
-# run "make install-strip".  However 'strip' might not be the right
+# Installed binaries are usually stripped using `strip' when the user
+# run `make install-strip'.  However `strip' might not be the right
 # tool to use in cross-compilation environments, therefore Automake
-# will honor the 'STRIP' environment variable to overrule this program.
+# will honor the `STRIP' environment variable to overrule this program.
 if test "$cross_compiling" != no; then
   if test -n "$ac_tool_prefix"; then
   # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.
 { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MKDIR_P" >&5
 $as_echo "$MKDIR_P" >&6; }
 
+mkdir_p="$MKDIR_P"
+case $mkdir_p in
+  [\\/$]* | ?:[\\/]*) ;;
+  */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;;
+esac
+
 for ac_prog in gawk mawk nawk awk
 do
   # Extract the first word of "$ac_prog", so it can be a program name with args.
 fi
 rmdir .tst 2>/dev/null
 
-@%:@ Check whether --enable-silent-rules was given.
-if test "${enable_silent_rules+set}" = set; then :
-  enableval=$enable_silent_rules; 
-fi
-
-case $enable_silent_rules in @%:@ (((
-  yes) AM_DEFAULT_VERBOSITY=0;;
-   no) AM_DEFAULT_VERBOSITY=1;;
-    *) AM_DEFAULT_VERBOSITY=1;;
-esac
-am_make=${MAKE-make}
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $am_make supports nested variables" >&5
-$as_echo_n "checking whether $am_make supports nested variables... " >&6; }
-if ${am_cv_make_support_nested_variables+:} false; then :
-  $as_echo_n "(cached) " >&6
-else
-  if $as_echo 'TRUE=$(BAR$(V))
-BAR0=false
-BAR1=true
-V=1
-am__doit:
-	@$(TRUE)
-.PHONY: am__doit' | $am_make -f - >/dev/null 2>&1; then
-  am_cv_make_support_nested_variables=yes
-else
-  am_cv_make_support_nested_variables=no
-fi
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_make_support_nested_variables" >&5
-$as_echo "$am_cv_make_support_nested_variables" >&6; }
-if test $am_cv_make_support_nested_variables = yes; then
-    AM_V='$(V)'
-  AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
-else
-  AM_V=$AM_DEFAULT_VERBOSITY
-  AM_DEFAULT_V=$AM_DEFAULT_VERBOSITY
-fi
-AM_BACKSLASH='\'
-
 if test "`cd $srcdir && pwd`" != "`pwd`"; then
   # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
   # is not polluted with repeated "-I."
 
 MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"}
 
-# For better backward compatibility.  To be removed once Automake 1.9.x
-# dies out for good.  For more background, see:
-# <http://lists.gnu.org/archive/html/automake/2012-07/msg00001.html>
-# <http://lists.gnu.org/archive/html/automake/2012-07/msg00014.html>
-mkdir_p='$(MKDIR_P)'
-
 # We need awk for the "check" target.  The system "awk" is bad on
 # some platforms.
 # Always define AMTAR for backward compatibility.  Yes, it's still used
 # in the wild :-(  We should find a proper way to deprecate it ...
 AMTAR='$${TAR-tar}'
 
-
-# We'll loop over all known methods to create a tar archive until one works.
-_am_tools='gnutar  pax cpio none'
-
 am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -'
 
 
 
 
 
-
 # Make sure we can run config.sub.
 $SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
   as_fn_error $? "cannot run $SHELL $ac_aux_dir/config.sub" "$LINENO" 5
   
         if test -n "$PYTHON"; then
       # If the user set $PYTHON, use it and don't search something else.
-      { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $PYTHON version is >= 2.7" >&5
-$as_echo_n "checking whether $PYTHON version is >= 2.7... " >&6; }
+      { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $PYTHON version >= 2.7" >&5
+$as_echo_n "checking whether $PYTHON version >= 2.7... " >&6; }
       prog="import sys
 # split strings by '.' and convert to numeric.  Append some zeros
 # because we need at least 4 digits for the hex conversion.
   { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
 $as_echo "yes" >&6; }
 else
-  { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
-$as_echo "no" >&6; }
-			       as_fn_error $? "Python interpreter is too old" "$LINENO" 5
+  as_fn_error $? "too old" "$LINENO" 5
 fi
       am_display_PYTHON=$PYTHON
     else
   $as_echo_n "(cached) " >&6
 else
   
-	for am_cv_pathless_PYTHON in python python2 python3 python3.3 python3.2 python3.1 python3.0 python2.7  python2.6 python2.5 python2.4 python2.3 python2.2 python2.1 python2.0 none; do
+	for am_cv_pathless_PYTHON in python python2 python3 python3.2 python3.1 python3.0 python2.7  python2.6 python2.5 python2.4 python2.3 python2.2 python2.1 python2.0 none; do
 	  test "$am_cv_pathless_PYTHON" = none && break
 	  prog="import sys
 # split strings by '.' and convert to numeric.  Append some zeros
   PYTHON_PLATFORM=$am_cv_python_platform