Issue #1 resolved
`agalma blastdb` command fails because it doesn't have write access
When installing on ubuntu with:
sudo sh install_agalma_ubuntu.sh
The directory /usr/local/share/agalma/blastdb is owned by root and cannot be written to by the user.
a chown should be added to the install script or the README should be updated to indicate:
sudo agalma blastdb