Hi Agama team,
I have been trying to run the 1.0 version of Agama in OSCAR but I have been getting the following error:
module: loading 'agalma/1.0.0'
biolite.config.init: override: threads=6 biolite.config.init: override: memory=122880M Traceback (most recent call last): File "/gpfs/runtime/opt/agalma/1.0.0/lib/python2.7/site-packages/agalma/transcriptome.py", line 24, in <module> from agalma import config File "/gpfs/runtime/opt/agalma/1.0.0/lib/python2.7/site-packages/agalma/config.py", line 29, in <module> parse( NameError: name 'parse' is not defined
This error happens when i try to initialize both the transcriptome or the test pipelines.
Any insights on what could cause this?