1. Casey Dunn
  2. agalma
  3. Issues
Issue #61 resolved

Alignments with many gaps

Felipe Zapata
created an issue

Sometimes, alignments end up with most sequences being just gaps. This may cause RAxML to crash with a non-zero return, in particular when doing bootstrap searches. We should either filter out those alignments in multalign or handle RAxML exceptions in genetree.

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