I'm attempting to run the postassemble and phylogeny pipelines on transcriptomes assembled with Trinity but not using Agalma. I keep running into an issue where I'll get an error message like:
"biolite.workflows.unpack_oases_header: bad oases header: comp0_c0_seq1"
This first occurred in the "exemplar" stage of the postassemble pipeline, however I was able to get around it by selecting my own exemplars and skipping the exemplar stage. Now, though, it is occurring again when I try to load my postassembled sequences in preparation for the phylogeny pipeline. Is there something I can do to fix this or get around the issue?