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Cnidaria assemblies

This repository contains the assemblies we generated for the analyses presented in:

Zapata F, Goetz FE, Smith SA, Howison M, Siebert S, Church SH, Sanders SM, Ames CL, McFadden CS France SC, Daly M, Collins AG, Haddock SHD, Dunn CW, Cartwright P. (2015) Phylogenomic analyses support traditional relationships within Cnidaria. PLoS One 10(10): e0139068. doi:10.1371/journal.pone.0139068. bioRxiv preprint doi:10.1101/017632.

For analysis code, please visit the paper repository at https://bitbucket.org/caseywdunn/cnidaria2014

The species included in this repository are:

  • Abylopsis tetragona
  • Aegina citrea
  • Agalma elegans
  • Aiptasia pallida
  • Alatina alata
  • Anthomastus sp.
  • Antipathes griggi
  • Atolla vanhoeffeni
  • Aurelia aurita
  • Calibelemnon francei
  • Candelabrum sp.
  • Cerianthid
  • Craseoa lathetica
  • Craspedacusta sp.
  • Ectopleuralarynx
  • Haliclystus sanjuanensis
  • Halitrephes valdiviae
  • Hydractinia symbiolongicarpus
  • Keratoisidinae
  • Nanomia bijuga
  • Nephthyigorgia sp.
  • Obelia longissima
  • Physalis physalis
  • Podocoryna carnea
  • Scleronephthya sp.

Assemblies for all other species are publicly available elsewhere (NCBI-EST database, JGI, NHGRI, or FlyBase).

All data are in Cnidaria_Transcriptomes directory.