Source

DunnHowisonZapata2013 / 09-report.sh

#!/bin/sh
#SBATCH -t 15

export BIOLITE_RESOURCES="database=$PWD/biolite.sqlite"

set -e

mkdir -p reports

agalma tabular_report -a -l -o reports/tabular
agalma resource_report -i SRX288285 -o reports/SRX288285

agalma report -i AgalmaExampleTree -o reports/AgalmaExampleTree
agalma phylogeny_report -i AgalmaExampleTree -o reports