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DunnHowisonZapata2013 / 06-load-Nematostella.sh

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#!/bin/sh
#SBATCH -t 12:00:00
#SBATCH -c 8
#SBATCH --mem=20g
#SBATCH -C e5-2600

ID=JGI_NEMVEC

export BIOLITE_RESOURCES="database=$PWD/biolite.sqlite,agalma_database=$PWD/agalma.sqlite,outdir=$PWD/analyses,threads=8,memory=20g"

set -e

mkdir -p scratch
cd scratch

agalma postassemble --id $ID
agalma load --id $ID --previous $ID --generic