beroe avatar beroe committed 11e3686

Proposed reorganization, using the __doc__ docstring instead of the variable usage in (edited online with Bitbucket)

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 #! /usr/bin/env python
-import re, sys
-usage = """
 Shortens the header of NCBI fasta files to Genus_species_gi
+import re, sys
 def shorten_headers( in_name ):
 	infile = open( in_name, "rU" )
 if __name__ == "__main__":
 	if len(sys.argv) < 2:
-		print usage
+		print __doc__
 		sys.exit( 0 )
 	in_name = sys.argv[1]
 	print shorten_headers( in_name )
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