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CUTADAPT ERROR
Issue #103
duplicate
I get the following error in miRNA mode: TERM environment variable not set. CUTADAPT ERROR :: system args failed: 256 (mkdir -p /home/labs/shlush/avivdm/minden_mir/miarma/output///cutadapt_results/ ; cut_adapt -b no -m 15 -M 35 -q 0 /home/labs/shlush/avivdm/minden_mir/fastq///Ex14_AML3_Cell_R1.fastq.gz > /home/labs/shlush/avivdm/minden_mir/miarma/output///cutadapt_results/Ex14_AML3_Cell_R1_cut.fastq 2>> /home/labs/shlush/avivdm/minden_mir/miarma/output//miARma_stat.31974.log) at /apps/RH7U2/general/miRNA/1.7.2/lib//CbBio/RNASeq/Adapt.pm line 854.
Even though I set adapter=no in the config file.
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Duplicate of
#102.