FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:02:15 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:08:16 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:17:06 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 10:23:35 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Fri Jul 6 11:01:37 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:15 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 19:01:51 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:04:54 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 20:58:28 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:10:40 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 21:43:28 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:00:03 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:06:39 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Sun Jul 8 22:54:00 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:36:33 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:39:00 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 13:48:59 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq Warning: Could not find any reads in "Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq" # reads processed: 0 # reads with at least one reported alignment: 0 (0.00%) # reads that failed to align: 0 (0.00%) No alignments FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:05:37 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 14:40:53 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% Traceback (most recent call last): File "./bin/Linux/cutadapt//cut_adapt", line 9, in from cutadapt.scripts import cutadapt File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/scripts/cutadapt.py", line 74, in from cutadapt.adapters import Adapter, ColorspaceAdapter, BACK, FRONT, PREFIX, ANYWHERE File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/adapters.py", line 4, in from cutadapt import align, colorspace File "/home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/align.py", line 225, in from cutadapt.calign import globalalign_locate ImportError: /home/leila/apps/miARma/cbbio-miarma-42e187a7f514/bin/Linux/cutadapt/cutadapt/calign.so: undefined symbol: PyString_Type FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873382_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873383_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873384_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873385_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 43% FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873386_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873387_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873388_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% FASTQCSTATS :: [Mon Jul 9 15:37:32 2018] Name SRR873389_fastqc Total Sequences: 500000 Sequence length: 37 Encoding: Sanger / Illumina 1.9 GCcontent: 44% cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873382.fastq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 487943 (97.6%) Trimmed bases: 7702330 bp (7.7 Mbp) (41.63% of total) Too short reads: 45402 (9.1% of processed reads) Too long reads: 12057 (2.4% of processed reads) Total time: 7.76 s Time per read: 0.016 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 487943 times. 30625 times, it overlapped the 5' end of a read 457318 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 29 7812.5 0 29 4 38 1953.1 0 38 5 3 488.3 0 3 6 1 122.1 0 1 21 1185 0.0 2 1143 40 2 22 13 0.0 2 13 23 779 0.0 2 759 20 24 240 0.0 2 16 213 11 25 276 0.0 2 175 98 3 26 27211 0.0 2 26632 557 22 27 757 0.0 2 0 729 28 28 93 0.0 2 0 0 93 Overview of removed sequences (3' or within) length count expect max.err error counts 3 102 7812.5 0 102 4 112 1953.1 0 112 5 141 488.3 0 141 6 262 122.1 0 262 7 573 30.5 0 573 8 1518 7.6 0 1518 9 2476 1.9 0 2440 36 10 2453 0.5 1 2253 200 11 2992 0.1 1 2798 194 12 4122 0.0 1 3762 360 13 23019 0.0 1 20671 2348 14 232352 0.0 1 228703 3649 15 104301 0.0 1 101030 3271 16 32612 0.0 1 30449 2163 17 8872 0.0 1 8469 403 18 5183 0.0 1 4915 262 6 19 6087 0.0 1 5675 396 16 20 6041 0.0 2 5764 223 54 21 4779 0.0 2 4398 211 170 22 3275 0.0 2 3133 108 34 23 2019 0.0 2 1937 65 17 24 1255 0.0 2 1161 77 17 25 1025 0.0 2 950 63 12 26 877 0.0 2 783 73 21 27 590 0.0 2 515 41 34 28 627 0.0 2 562 51 14 29 677 0.0 2 613 48 16 30 862 0.0 2 809 50 3 31 314 0.0 2 295 14 5 32 572 0.0 2 529 39 4 33 1953 0.0 2 1877 67 9 34 5158 0.0 2 5017 135 6 35 99 0.0 2 88 8 3 36 18 0.0 2 16 2 cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873383.fq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 485637 (97.1%) Trimmed bases: 7705377 bp (7.7 Mbp) (41.65% of total) Too short reads: 51481 (10.3% of processed reads) Too long reads: 14363 (2.9% of processed reads) Total time: 7.77 s Time per read: 0.016 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 485637 times. 42189 times, it overlapped the 5' end of a read 443448 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 45 7812.5 0 45 4 77 1953.1 0 77 5 6 488.3 0 6 6 1 122.1 0 1 7 1 30.5 0 1 8 1 7.6 0 1 21 1561 0.0 2 1515 43 3 22 10 0.0 2 10 23 1085 0.0 2 1066 15 4 24 345 0.0 2 19 314 12 25 553 0.0 2 419 124 10 26 36441 0.0 2 35929 499 13 27 1963 0.0 2 0 1924 39 28 100 0.0 2 0 0 100 Overview of removed sequences (3' or within) length count expect max.err error counts 3 242 7812.5 0 242 4 178 1953.1 0 178 5 202 488.3 0 202 6 345 122.1 0 345 7 526 30.5 0 526 8 1372 7.6 0 1372 9 2010 1.9 0 1993 17 10 2506 0.5 1 1865 641 11 2962 0.1 1 2182 780 12 3879 0.0 1 2783 1096 13 22537 0.0 1 16179 6358 14 234427 0.0 1 196047 38380 15 100612 0.0 1 80754 19858 16 30115 0.0 1 22065 8050 17 8205 0.0 1 6079 2126 18 4882 0.0 1 3886 993 3 19 5272 0.0 1 3888 1357 27 20 4870 0.0 2 3583 1218 69 21 3882 0.0 2 2984 744 154 22 3430 0.0 2 2602 786 42 23 1767 0.0 2 1304 429 34 24 917 0.0 2 725 173 19 25 525 0.0 2 384 134 7 26 249 0.0 2 173 72 4 27 146 0.0 2 92 40 14 28 101 0.0 2 71 25 5 29 117 0.0 2 92 24 1 30 201 0.0 2 168 33 31 123 0.0 2 102 20 1 32 398 0.0 2 346 50 2 33 2174 0.0 2 2046 121 7 34 4198 0.0 2 4001 186 11 35 63 0.0 2 55 6 2 36 15 0.0 2 9 4 2 cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873384.fastq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 492200 (98.4%) Trimmed bases: 8381929 bp (8.4 Mbp) (45.31% of total) Too short reads: 89024 (17.8% of processed reads) Too long reads: 7800 (1.6% of processed reads) Total time: 8.96 s Time per read: 0.018 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 492200 times. 54692 times, it overlapped the 5' end of a read 437508 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 17 7812.5 0 17 4 37 1953.1 0 37 5 77 488.3 0 77 6 1 122.1 0 1 21 1284 0.0 2 1236 48 22 34 0.0 2 26 8 23 1133 0.0 2 1117 16 24 312 0.0 2 39 267 6 25 753 0.0 2 548 200 5 26 50628 0.0 2 50009 601 18 27 388 0.0 2 0 372 16 28 28 0.0 2 0 0 28 Overview of removed sequences (3' or within) length count expect max.err error counts 3 114 7812.5 0 114 4 122 1953.1 0 122 5 239 488.3 0 239 6 258 122.1 0 258 7 282 30.5 0 282 8 353 7.6 0 353 9 750 1.9 0 749 1 10 1216 0.5 1 1189 27 11 1659 0.1 1 1574 85 12 2409 0.0 1 2328 81 13 21203 0.0 1 19881 1322 14 211979 0.0 1 208697 3282 15 109287 0.0 1 107735 1552 16 27772 0.0 1 26796 976 17 6444 0.0 1 6107 337 18 2956 0.0 1 2864 92 19 3462 0.0 1 3315 142 5 20 3572 0.0 2 3417 139 16 21 3885 0.0 2 3730 120 35 22 3764 0.0 2 3643 107 14 23 2874 0.0 2 2769 91 14 24 1901 0.0 2 1803 77 21 25 1453 0.0 2 1401 43 9 26 1197 0.0 2 1154 40 3 27 917 0.0 2 892 20 5 28 725 0.0 2 699 20 6 29 682 0.0 2 657 24 1 30 824 0.0 2 802 21 1 31 1277 0.0 2 1221 54 2 32 2814 0.0 2 2685 117 12 33 8825 0.0 2 8626 184 15 34 12005 0.0 2 11787 212 6 35 268 0.0 2 258 9 1 36 20 0.0 2 15 4 1 cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873385.fq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 492531 (98.5%) Trimmed bases: 8431989 bp (8.4 Mbp) (45.58% of total) Too short reads: 88847 (17.8% of processed reads) Too long reads: 7469 (1.5% of processed reads) Total time: 7.88 s Time per read: 0.016 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 492531 times. 46979 times, it overlapped the 5' end of a read 445552 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 32 7812.5 0 32 4 44 1953.1 0 44 5 47 488.3 0 47 10 1 0.5 1 0 1 21 1056 0.0 2 1032 24 22 7 0.0 2 6 1 23 1415 0.0 2 1397 14 4 24 364 0.0 2 26 310 28 25 623 0.0 2 454 161 8 26 42662 0.0 2 42049 595 18 27 703 0.0 2 0 688 15 28 25 0.0 2 0 0 25 Overview of removed sequences (3' or within) length count expect max.err error counts 3 264 7812.5 0 264 4 273 1953.1 0 273 5 324 488.3 0 324 6 336 122.1 0 336 7 488 30.5 0 488 8 987 7.6 0 987 9 2176 1.9 0 2161 15 10 2251 0.5 1 2203 48 11 3311 0.1 1 3234 77 12 3973 0.0 1 3764 209 13 22206 0.0 1 21206 1000 14 212504 0.0 1 209990 2514 15 87343 0.0 1 85409 1934 16 29807 0.0 1 28917 890 17 8093 0.0 1 7772 321 18 5828 0.0 1 5576 238 14 19 5620 0.0 1 5323 251 46 20 5978 0.0 2 5671 238 69 21 5615 0.0 2 5061 256 298 22 5120 0.0 2 4889 177 54 23 3249 0.0 2 3121 106 22 24 1826 0.0 2 1700 100 26 25 1314 0.0 2 1246 57 11 26 779 0.0 2 746 29 4 27 523 0.0 2 489 20 14 28 498 0.0 2 480 15 3 29 1028 0.0 2 987 36 5 30 3609 0.0 2 3498 104 7 31 2373 0.0 2 2248 110 15 32 10345 0.0 2 9957 353 35 33 8368 0.0 2 8141 206 21 34 8452 0.0 2 8251 176 25 35 594 0.0 2 547 32 15 36 97 0.0 2 87 8 2 cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873386.fastq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 485874 (97.2%) Trimmed bases: 7515528 bp (7.5 Mbp) (40.62% of total) Too short reads: 35132 (7.0% of processed reads) Too long reads: 14126 (2.8% of processed reads) Total time: 7.89 s Time per read: 0.016 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 485874 times. 20031 times, it overlapped the 5' end of a read 465843 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 18 7812.5 0 18 4 68 1953.1 0 68 5 7 488.3 0 7 8 1 7.6 0 1 21 457 0.0 2 440 16 1 22 4 0.0 2 4 23 531 0.0 2 520 10 1 24 202 0.0 2 9 133 60 25 227 0.0 2 161 58 8 26 18144 0.0 2 17763 356 25 27 313 0.0 2 0 292 21 28 59 0.0 2 0 0 59 Overview of removed sequences (3' or within) length count expect max.err error counts 3 225 7812.5 0 225 4 168 1953.1 0 168 5 199 488.3 0 199 6 365 122.1 0 365 7 590 30.5 0 590 8 1724 7.6 0 1724 9 6174 1.9 0 2648 3526 10 2505 0.5 1 2364 141 11 2855 0.1 1 2711 144 12 3435 0.0 1 3133 302 13 22189 0.0 1 20843 1346 14 235251 0.0 1 231698 3553 15 99505 0.0 1 95981 3524 16 40547 0.0 1 37546 3001 17 10004 0.0 1 9343 661 18 5542 0.0 1 5290 244 8 19 4904 0.0 1 4608 246 50 20 4905 0.0 2 4719 134 52 21 4838 0.0 2 4191 171 476 22 4262 0.0 2 4076 149 37 23 2197 0.0 2 2058 102 37 24 1270 0.0 2 1184 60 26 25 1381 0.0 2 1290 68 23 26 978 0.0 2 874 74 30 27 1047 0.0 2 945 54 48 28 1102 0.0 2 975 95 32 29 1295 0.0 2 1171 93 31 30 1402 0.0 2 1334 49 19 31 306 0.0 2 287 18 1 32 766 0.0 2 741 22 3 33 1467 0.0 2 1423 35 9 34 2303 0.0 2 2235 63 5 35 91 0.0 2 74 8 9 36 51 0.0 2 45 3 3 cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873387.fastq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 488310 (97.7%) Trimmed bases: 7708302 bp (7.7 Mbp) (41.67% of total) Too short reads: 43306 (8.7% of processed reads) Too long reads: 11690 (2.3% of processed reads) Total time: 7.72 s Time per read: 0.015 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 488310 times. 31194 times, it overlapped the 5' end of a read 457116 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 13 7812.5 0 13 4 62 1953.1 0 62 5 3 488.3 0 3 20 1 0.0 2 0 1 21 750 0.0 2 734 15 1 22 3 0.0 2 2 1 23 1097 0.0 2 1083 10 4 24 387 0.0 2 17 251 119 25 357 0.0 2 242 105 10 26 27885 0.0 2 27478 381 26 27 519 0.0 2 0 507 12 28 117 0.0 2 0 0 117 Overview of removed sequences (3' or within) length count expect max.err error counts 3 89 7812.5 0 89 4 99 1953.1 0 99 5 136 488.3 0 136 6 197 122.1 0 197 7 317 30.5 0 317 8 843 7.6 0 843 9 2622 1.9 0 2460 162 10 3155 0.5 1 3036 119 11 3493 0.1 1 3384 109 12 3784 0.0 1 3595 189 13 19684 0.0 1 18465 1219 14 229606 0.0 1 226451 3155 15 96015 0.0 1 92989 3026 16 46678 0.0 1 43484 3194 17 11100 0.0 1 10691 409 18 5465 0.0 1 5255 203 7 19 5378 0.0 1 5058 243 77 20 5148 0.0 2 4971 127 50 21 5312 0.0 2 4540 174 598 22 5051 0.0 2 4855 153 43 23 2435 0.0 2 2344 77 14 24 964 0.0 2 902 44 18 25 524 0.0 2 503 12 9 26 244 0.0 2 221 18 5 27 176 0.0 2 165 8 3 28 224 0.0 2 200 20 4 29 361 0.0 2 346 14 1 30 845 0.0 2 814 25 6 31 332 0.0 2 316 14 2 32 1158 0.0 2 1117 35 6 33 2468 0.0 2 2401 50 17 34 3075 0.0 2 3000 61 14 35 119 0.0 2 104 5 10 36 19 0.0 2 14 5 cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873388.fastq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 488844 (97.8%) Trimmed bases: 7797364 bp (7.8 Mbp) (42.15% of total) Too short reads: 50355 (10.1% of processed reads) Too long reads: 11156 (2.2% of processed reads) Total time: 7.64 s Time per read: 0.015 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 488844 times. 28900 times, it overlapped the 5' end of a read 459944 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 15 7812.5 0 15 4 50 1953.1 0 50 5 4 488.3 0 4 19 2 0.0 1 0 0 2 21 560 0.0 2 554 5 1 22 4 0.0 2 3 1 23 743 0.0 2 728 12 3 24 317 0.0 2 10 196 111 25 307 0.0 2 227 73 7 26 26297 0.0 2 25847 420 30 27 493 0.0 2 0 479 14 28 108 0.0 2 0 0 108 Overview of removed sequences (3' or within) length count expect max.err error counts 3 214 7812.5 0 214 4 127 1953.1 0 127 5 170 488.3 0 170 6 226 122.1 0 226 7 273 30.5 0 273 8 631 7.6 0 631 9 1821 1.9 0 1505 316 10 2155 0.5 1 2107 48 11 2487 0.1 1 2415 72 12 3189 0.0 1 3025 164 13 22368 0.0 1 20852 1516 14 235239 0.0 1 232069 3170 15 96375 0.0 1 93586 2789 16 38344 0.0 1 36727 1617 17 10417 0.0 1 10079 338 18 5523 0.0 1 5301 209 13 19 4975 0.0 1 4634 292 49 20 4685 0.0 2 4491 151 43 21 4426 0.0 2 3805 166 455 22 4209 0.0 2 4082 83 44 23 2276 0.0 2 2176 81 19 24 1269 0.0 2 1176 64 29 25 1202 0.0 2 1129 53 20 26 978 0.0 2 905 47 26 27 1006 0.0 2 921 47 38 28 1556 0.0 2 1407 123 26 29 2436 0.0 2 2295 111 30 30 3507 0.0 2 3372 117 18 31 632 0.0 2 587 38 7 32 1397 0.0 2 1340 47 10 33 2311 0.0 2 2239 60 12 34 3308 0.0 2 3210 85 13 35 155 0.0 2 128 13 14 36 57 0.0 2 48 9 cutadapt version 1.3 Command line parameters: -b ATCTCGTATGCCGTCTTCTGCTTGAA -m 15 -M 35 -q 0 Examples/basic_examples/miRNAs/reads///SRR873389.fastq.gz Maximum error rate: 10.00% No. of adapters: 1 Processed reads: 500000 Processed bases: 18500000 bp (18.5 Mbp) Trimmed reads: 487893 (97.6%) Trimmed bases: 7491518 bp (7.5 Mbp) (40.49% of total) Too short reads: 32267 (6.5% of processed reads) Too long reads: 12107 (2.4% of processed reads) Total time: 7.73 s Time per read: 0.015 ms === Adapter 1 === Adapter 'ATCTCGTATGCCGTCTTCTGCTTGAA', length 26, was trimmed 487893 times. 20317 times, it overlapped the 5' end of a read 467576 times, it overlapped the 3' end or was within the read No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20-26 bp: 2 Overview of removed sequences (5') length count expect max.err error counts 3 20 7812.5 0 20 4 52 1953.1 0 52 19 1 0.0 1 0 0 1 20 1 0.0 2 0 0 1 21 504 0.0 2 497 7 22 4 0.0 2 4 23 619 0.0 2 610 5 4 24 200 0.0 2 11 129 60 25 193 0.0 2 140 52 1 26 18439 0.0 2 18144 264 31 27 224 0.0 2 0 217 7 28 60 0.0 2 0 0 60 Overview of removed sequences (3' or within) length count expect max.err error counts 3 183 7812.5 0 183 4 214 1953.1 0 214 5 268 488.3 0 268 6 566 122.1 0 566 7 779 30.5 0 779 8 2005 7.6 0 2005 9 4160 1.9 0 2690 1470 10 2614 0.5 1 2506 108 11 2470 0.1 1 2373 97 12 3234 0.0 1 3029 205 13 22953 0.0 1 21686 1267 14 245935 0.0 1 242712 3223 15 98619 0.0 1 96023 2596 16 37738 0.0 1 34987 2751 17 10052 0.0 1 9563 489 18 5045 0.0 1 4871 164 10 19 4910 0.0 1 4648 216 46 20 4589 0.0 2 4448 100 41 21 4217 0.0 2 3681 95 441 22 4493 0.0 2 4302 137 54 23 2583 0.0 2 2474 81 28 24 1406 0.0 2 1323 61 22 25 1036 0.0 2 981 35 20 26 579 0.0 2 534 24 21 27 535 0.0 2 480 30 25 28 540 0.0 2 483 44 13 29 584 0.0 2 543 29 12 30 759 0.0 2 729 26 4 31 213 0.0 2 200 12 1 32 592 0.0 2 573 16 3 33 1424 0.0 2 1387 30 7 34 2176 0.0 2 2130 37 9 35 77 0.0 2 65 5 7 36 28 0.0 2 27 1 FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873382_cut_fastqc Total Sequences: 442541 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 41% FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873383_cut_fastqc Total Sequences: 434156 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 41% FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873384_cut_fastqc Total Sequences: 403176 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 40% FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873385_cut_fastqc Total Sequences: 403684 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 41% FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873386_cut_fastqc Total Sequences: 450742 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 41% FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873387_cut_fastqc Total Sequences: 445004 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 42% FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873388_cut_fastqc Total Sequences: 438489 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 41% FASTQCSTATS :: [Mon Jul 9 15:38:55 2018] Name SRR873389_cut_fastqc Total Sequences: 455626 Sequence length: 15-34 Encoding: Sanger / Illumina 1.9 GCcontent: 41% BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873382_cut.fastq # reads processed: 442541 # reads with at least one reported alignment: 436038 (98.53%) # reads that failed to align: 6503 (1.47%) Reported 436038 alignments to 1 output stream(s) BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873383_cut.fastq # reads processed: 434156 # reads with at least one reported alignment: 428129 (98.61%) # reads that failed to align: 6027 (1.39%) Reported 428129 alignments to 1 output stream(s) BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873384_cut.fastq # reads processed: 403176 # reads with at least one reported alignment: 397261 (98.53%) # reads that failed to align: 5915 (1.47%) Reported 397261 alignments to 1 output stream(s) BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873385_cut.fastq # reads processed: 403684 # reads with at least one reported alignment: 390244 (96.67%) # reads that failed to align: 13440 (3.33%) Reported 390244 alignments to 1 output stream(s) BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873386_cut.fastq # reads processed: 450742 # reads with at least one reported alignment: 438707 (97.33%) # reads that failed to align: 12035 (2.67%) Reported 438707 alignments to 1 output stream(s) BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873387_cut.fastq # reads processed: 445004 # reads with at least one reported alignment: 439589 (98.78%) # reads that failed to align: 5415 (1.22%) Reported 439589 alignments to 1 output stream(s) BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873388_cut.fastq # reads processed: 438489 # reads with at least one reported alignment: 430699 (98.22%) # reads that failed to align: 7790 (1.78%) Reported 430699 alignments to 1 output stream(s) BOWTIE1 :: File:Examples/basic_examples/miRNAs/Known_miRNAs/results//cutadapt_results/SRR873389_cut.fastq # reads processed: 455626 # reads with at least one reported alignment: 446836 (98.07%) # reads that failed to align: 8790 (1.93%) Reported 446836 alignments to 1 output stream(s)