QC_EdgeR :: [Sat Oct 14 21:42:36 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sat Oct 14 22:02:37 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sat Oct 14 22:45:53 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sat Oct 14 23:16:41 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sat Oct 14 23:30:00 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sat Oct 14 23:33:02 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sat Oct 14 23:36:34 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sun Oct 15 00:05:18 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sun Oct 15 00:09:26 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sun Oct 15 00:11:26 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sun Oct 15 14:50:51 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM") QC_EdgeR :: [Sun Oct 15 15:41:29 2017] Executing source("./lib/CbBio/RNASeq/R-Scripts/QC_EdgeR.R") setwd("/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results") resultsfiles<-QC_EdgeR(projectdir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results",dir="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/Known_miRNAs/results/Readcount_results", file="cut_bw1-ReadCount.tab", targetfile="/home/apalma/cbbio-miarma-978bff953ed7/Examples/basic_examples/miRNAs/data/targets.txt", label="TSA_cut_bw1", filter="yes", cpmvalue=2, repthreshold=1, normethod="TMM")