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Issues (101–125 of 128)

Title T P Status Votes Assignee Created Updated Actions
#29: Changing threads to 4 and verbose to 0 in mRNA analysis when tests will finish.
task major resolved
#36: Unnecesary parameters in circRNAs example 4.1
task major resolved
#28: Parameters for FAnalysis [Documentation]
task major resolved
#31: Changed parameter read_mismatches to tophat_read_mismatches
task major resolved
#27: FAnalysis ¿? Forgotten module
bug major resolved
#30: Definition of tophat_multihits parameter for documentation, allowed values, default value,...
task major resolved
#25: Change case in 3 miARma parameters
bug major resolved
#21: cambiar projectdir por outputdir/output_dir
enhancement major resolved
#24: DEAnalysis : replicatevalue in documentation
bug major resolved
#26: Change case in 3 miARma parameters in documentation
bug major resolved
#12: Add STar as a new aligner (very very fast)
proposal major on hold
#10: Error in 5.4 example
bug major resolved
#23: transcriptome_index parameter in documentation
task major resolved
#17: Adding check parameter to ini file in Documentation
task major resolved
#22: transcriptome_index in tophat
bug major resolved
#16: Addition of target prediction module to DeNovo miRNA pipeline
proposal major resolved
#20: add a parameter to filter by fold change in target prediction
enhancement major resolved
#14: Check all need files (specified in ini) before starting the analysis
enhancement major resolved
#19: Change path to hg19.fa in all aligners.ini
bug major resolved
#18: Adding installation instructions to miARma Documentation
task major resolved
#15: Add suppport for different adapter per read file
enhancement major resolved
#11: BWA seems to ignore bz2 files
bug major resolved
#9: Fixing error in 2.4 example
bug major resolved
#8: Moving parameters to general
enhancement major resolved
#6: Separation of [DeAnalysis] from [DeNovo] module
task major resolved
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