Viewing controls as GET URL parameters?

[Philip Holmgren]

Hi,

To view the BAF plots, we always check the option Viewing Control -> Show read coverage because read coverage can greatly influence effect on BAF.

I checked the docs and looked at the checkURLSettings function in function_Reactivity.R . As far as I can tell this can't be specified in the URL and needs to be checked manually.

As a 'nice to have' it would be convenient that this would be a GET parameter. Would that be possible?

Kind regards, Philip

[Job van Riet]

Hi Philip,

I've updated the GET parameters to also include this using coverageShown=T, e.g.:

http://localhost:1234/?vcfFile=../extdata/example_multivcf.vcf&coverageShown=T

I've made a new Docker with these changes:

docker pull ccbc/snpitty

Hope this helps!

Kind regards,

Job

[Philip Holmgren]

Just updated to the new version and tested it.

Works great.

Thanks for the quick help!

Kind regards, Philip