Check and correct general documentation.

Issue #721 resolved
Paul Turner
created an issue

Go through the text of the general documentation (i.e the .dox files) and ensure they are correct and consistent in relation to the changes made for 0.8.

This includes updating the beginners tutorial series.

Also ensure that the licensing information that related to dependencies and code we 'borrowed' is up to date and correct.

Reproducibility: N/A

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