GALAXY ====== http://galaxyproject.org/ The latest information about Galaxy is always available via the Galaxy website above. HOW TO START ============ Galaxy requires Python 2.6 or 2.7. To check your python version, run: % python -V Python 2.7.3 Start Galaxy: % sh run.sh Once Galaxy completes startup, you should be able to view Galaxy in your browser at: http://localhost:8080 You may wish to make changes from the default configuration. This can be done in the universe_wsgi.ini file. Tools are configured in tool_conf.xml. Details on adding tools can be found on the Galaxy website (linked above). Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
jWizard incompatibility with jquery from galaxy-dist
bea98c2 - Pull from galaxy-dist
a477486 - Bugfix for tool-to-destination mapping, tool ids are lowercased but the mapping id was not lowercased.
4b1c7ad - Remove unmaintained RGENETICS tools from Galaxy Main
1f34ec1 - Pack script.
185e249 - Trackster: fix data-mode compatibility test; this fixes mode changing from coverage to dense/squish/pack.
86af9f1 - Provide keyword flag to allow unspecified as a valid organism selection. Useful for assembly/non-resequencing projects
06357ea - Avoid sorting errors on displays that sort on non-column items. Thanks to Lee Katz
08652ae - Fix display of project sample tables, avoiding new restrictions on tables in SQLAlchemy. Better handle display of multiplex in forms. Thanks to Lee Katz
395ade9 - Use new SQLAlchemy order_by syntax for ordering by multiple criteria. Thanks to Lee Katz
668c00d - Fix nglims table creation for upgrade/downgrade on SQLite with new engine and metadata approach. Thanks to Lee Katz
4638527 - Add new engine parameter to downgrade function for 0112