1. Brad Chapman
  2. galaxy-central

Source

galaxy-central / lib / galaxy / datatypes / converters / bam_to_summary_tree_converter.xml

<tool id="CONVERTER_bam_to_summary_tree_0" name="Convert BAM to Summary Tree" version="1.0.0" hidden="true">
  <!--  <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
  <command interpreter="python">
    sam_or_bam_to_summary_tree_converter.py --bam $input1 $input1.metadata.bam_index $output1
  </command>
  <inputs>
    <param format="bam" name="input1" type="data" label="Choose BAM file"/>
   </inputs>
  <outputs>
    <data format="summary_tree" name="output1"/>
  </outputs>
  <help>
  </help>
</tool>