Population sample

[Former user]

I am interested in detecting SVs for multiple samples of a given population in the same run, like what we can do with delly and lumpy. Can we use SWAN for population analyses? I don't want to run per chr per sample because we have > 100 samples.

Thanking you! Yongfeng

[Charlie Xia]

It is not directly supported by SWAN. But it should be easily executed using shell loops, such as "for x in ls *.bam; do swan bla bla; done;