Population sample
Issue #7
resolved
I am interested in detecting SVs for multiple samples of a given population in the same run, like what we can do with delly and lumpy. Can we use SWAN for population analyses? I don't want to run per chr per sample because we have > 100 samples.
Thanking you! Yongfeng
Comments (2)
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repo owner -
repo owner - changed status to resolved
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It is not directly supported by SWAN. But it should be easily executed using shell loops, such as "for x in
ls *.bam
; do swan bla bla; done;