Anonymous avatar Anonymous committed 093cca4

Add explicit dependencies

Comments (0)

Files changed (7)

chemistry-common/pom.xml

             <groupId>com.hp.hpl.jena</groupId>
             <artifactId>jena</artifactId>
         </dependency>
+
+        <dependency>
+            <groupId>commons-io</groupId>
+            <artifactId>commons-io</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>xom</groupId>
+            <artifactId>xom</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>joda-time</groupId>
+            <artifactId>joda-time</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>org.slf4j</groupId>
+            <artifactId>slf4j-api</artifactId>
+        </dependency>
+
         <dependency>
             <groupId>com.google.guava</groupId>
             <artifactId>guava-collections</artifactId>

chemistry-common/src/main/java/net/chempound/chemistry/inchi/InchiTool.java

 
 import net.sf.jniinchi.*;
 import nu.xom.Node;
-import org.apache.log4j.Logger;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 import org.xmlcml.cml.base.CMLUtil;
 import org.xmlcml.cml.element.CMLAtom;
 import org.xmlcml.cml.element.CMLBond;
  */
 public class InchiTool {
 
-    private static final Logger LOG = Logger.getLogger(InchiTool.class);
+    private static final Logger LOG = LoggerFactory.getLogger(InchiTool.class);
 
     /**
      * <p>

chemistry-import-testutils/pom.xml

         </dependency>
 
         <dependency>
-            <groupId>junit</groupId>
-            <artifactId>junit</artifactId>
+            <groupId>org.xml-cml</groupId>
+            <artifactId>cmlxom</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>commons-io</groupId>
+            <artifactId>commons-io</artifactId>
         </dependency>
 
         <dependency>

chemistry-importer/pom.xml

         </dependency>
 
         <dependency>
+            <groupId>javax.inject</groupId>
+            <artifactId>javax.inject</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>org.xml-cml</groupId>
+            <artifactId>cmlxom</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>xom</groupId>
+            <artifactId>xom</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>commons-io</groupId>
+            <artifactId>commons-io</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>org.slf4j</groupId>
+            <artifactId>slf4j-api</artifactId>
+        </dependency>
+
+
+        <dependency>
             <groupId>sea36</groupId>
             <artifactId>JmolImageGenerator</artifactId>
             <exclusions>

chemistry-jmol-plugin/pom.xml

             <artifactId>chempound-webapi</artifactId>
         </dependency>
 
-        <dependency>
-            <groupId>com.google.inject</groupId>
-            <artifactId>guice</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>com.google.inject.extensions</groupId>
-            <artifactId>guice-multibindings</artifactId>
-        </dependency>
-
     </dependencies>
 
 </project>

chemistry-search-structure/pom.xml

     <name>Chempound : Chemistry (Structure Search)</name>
 
     <dependencies>
+
+        <dependency>
+            <groupId>net.chempound</groupId>
+            <artifactId>chempound-api</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>net.chempound</groupId>
+            <artifactId>chempound-rdf-cml</artifactId>
+        </dependency>
         <dependency>
             <groupId>net.chempound.chemistry</groupId>
             <artifactId>chemistry-common</artifactId>
         </dependency>
-
         <dependency>
             <groupId>net.chempound</groupId>
             <artifactId>chempound-webapi</artifactId>
         </dependency>
 
         <dependency>
-            <groupId>com.google.inject</groupId>
-            <artifactId>guice</artifactId>
+            <groupId>com.hp.hpl.jena</groupId>
+            <artifactId>jena</artifactId>
         </dependency>
+
         <dependency>
-            <groupId>com.google.inject.extensions</groupId>
-            <artifactId>guice-multibindings</artifactId>
+            <groupId>xom</groupId>
+            <artifactId>xom</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>javax.inject</groupId>
+            <artifactId>javax.inject</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>org.slf4j</groupId>
+            <artifactId>slf4j-api</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>org.xml-cml</groupId>
+            <artifactId>cmlxom</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>org.apache.httpcomponents</groupId>
+            <artifactId>httpcore</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>commons-io</groupId>
+            <artifactId>commons-io</artifactId>
         </dependency>
 
         <dependency>
             <groupId>org.apache.httpcomponents</groupId>
             <artifactId>httpclient</artifactId>
         </dependency>
+
         <dependency>
             <groupId>org.xml-cml</groupId>
             <artifactId>jumbo</artifactId>
-            <version>6.0</version>
         </dependency>
     </dependencies>
 
                 <groupId>org.xml-cml</groupId>
                 <artifactId>cmlxom</artifactId>
                 <version>3.1</version>
+                <exclusions>
+                    <exclusion>
+                        <groupId>xml-apis</groupId>
+                        <artifactId>xml-apis</artifactId>
+                    </exclusion>
+                </exclusions>
             </dependency>
             <dependency>
                 <groupId>com.google.guava</groupId>
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for ProjectModifiedEvent.java.
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.