Hi, this is not an issue but maybe other people will find this question useful. Will ChICAGO have a problem with a dataset whose viewpoints/anchors are very close from each other? Let's say there are 100 viewpoints/anchors and they are all within 10 kb. Many of the probes would be shared by the viewpoints. What would happen in this case? I imagine the signal will be the same across several viewpoints. One reason for overcrowding is to increase the chance of capturing fragments but I wonder if this will cause problems in the analysis. Thank you.
Issue #13 resolved