Is it possible to set a random seed for CHiCAGO? - each CHiCAGO run yields a different number of significant interactions (score >5) due to low scoring interactions sometimes slip over the threshold of 5, I guess this is because of the random sampling used to build the model?. Currently i've been dealing with this by running CHiCAGO several times and then selecting the shortest list of interactions to take onto further analysis as that list should have the least false positives? Is this the most appropriate way to deal with this or is there a better solution?
Many thanks Charlie