I am using all the scripts from CHiCAGO as a pipeline and I would like to run the entire pipeline in python 3.*
I have made minor modifications in the makeDesignFiles.py script to be compatible with both python 2 and 3. I have run it with different data-sets and the output is the same. I think that the most organic way is to do a pull request to the CHiCAGO repository if you agree. I am attaching the script. Thank you very much for your time. Pablo.