I have been trying to get Chicago working, but I keep getting this output:
Starting chicagoPipeline... *** Running normaliseBaits... Normalising baits... Reading NPerBin file... Computing binwise means... *** Running normaliseOtherEnds... Preprocessing input... Computing trans-counts... Filtering out 178 other ends with top 0.01% number of trans-interactions Binning... Computing total bait counts... Reading NBaitsPerBin file... /var/spool/slurm/slurmd/job34277626/slurm_script: line 11: 52938 Killed
I am using version 1.13.0 installed using biocLite, I also tried installing using bitbucket, but it keeps defaulting to an earlier version (1.1.8) for some reason. A co-worker was able to run this file using version 1.6.0 so not sure if it is a bug in the new version or something with my installation or some other package that is being used at this step that is missing. I am using R 3.6.0
I was hoping you could advise why I might be getting this error. Let me know if you need more information about the error or my input files.