runChicago.R errors during "Reading NBaitsPerBin file" step
Issue #47
new
Hi,
I have been trying to get Chicago working, but I keep getting this output:
Starting chicagoPipeline...
*** Running normaliseBaits...
Normalising baits...
Reading NPerBin file...
Computing binwise means...
*** Running normaliseOtherEnds...
Preprocessing input...
Computing trans-counts...
Filtering out 178 other ends with top 0.01% number of trans-interactions
Binning...
Computing total bait counts...
Reading NBaitsPerBin file...
/var/spool/slurm/slurmd/job34277626/slurm_script: line 11: 52938 Killed
I am using version 1.13.0 installed using biocLite, I also tried installing using bitbucket, but it keeps defaulting to an earlier version (1.1.8) for some reason. A co-worker was able to run this file using version 1.6.0 so not sure if it is a bug in the new version or something with my installation or some other package that is being used at this step that is missing. I am using R 3.6.0
I was hoping you could advise why I might be getting this error. Let me know if you need more information about the error or my input files.
Thanks!
I have the same issue as well, it seems like something happened during the .Nbpb file reading.