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  3. Chicago

Issues

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Issues (51–75 of 82)

Title T P Status Votes Assignee Created Updated Actions
#32: Chicago package cannot using its own truncated maxLBrownEst
bug major new
#31: advice for assessing concordance between primary capture and reciprocal capture results
task major resolved
#30: makeDesignFiles.py
bug major resolved
#29: Bam2chicago: no such file or directory
bug major resolved
#28: BAM2chicago awk error
bug major resolved
#27: Not able to generate .baitmap files using create_baitmap_rmap.pl
task minor resolved
#26: all interactions filtered out - error
bug major new
chicagoTeam
#25: Reads filtered from chinput file?
bug major resolved
chicagoTeam
#24: Intersecting interactions from replicates
task major resolved
chicagoTeam
#23: Is it possible to set a random seed - each run of chicago yields a different number of interactions
proposal major new
chicagoTeam
#22: run Chicago Error
bug major new
#21: Error while running readAndMerge()
bug major resolved
chicagoTeam
#20: Error: cannot allocate vector of size ...
bug blocker resolved
chicagoTeam
#19: runChicago Error
bug major new
#18: en_full_cis_range and en-trans
task major resolved
#17: runChicago.R
task major resolved
#16: Error: rmap file should have 4 columns
bug minor new
chicagoTeam
#15: Input files and how to get them
task major resolved
#14: bam2chicago bedtools error
task major resolved
#13: Minimum spacing between viewpoints?
task major resolved
chicagoTeam
#12: correct workflow for weight recalibration
task major resolved
chicagoTeam
#11: Altering rmap files in specific genomic regions
task major resolved
#10: Differing numbers of interactions reported in seqmonk and washU output files
bug major resolved
chicagoTeam
#9: Examples data / playground data
proposal minor new
#8: Error in normaliseOtherEnds when combining multiple datsets
bug major resolved
chicagoTeam
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