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Issues (51–75 of 82)

Title T P Status Votes Assignee Created Updated Actions
#31: advice for assessing concordance between primary capture and reciprocal capture results
task major resolved
#30: makeDesignFiles.py
bug major resolved
#24: Intersecting interactions from replicates
task major resolved
chicagoTeam
#17: runChicago.R
task major resolved
#25: Reads filtered from chinput file?
bug major resolved
chicagoTeam
#29: Bam2chicago: no such file or directory
bug major resolved
#28: BAM2chicago awk error
bug major resolved
#26: all interactions filtered out - error
bug major new
chicagoTeam
#22: run Chicago Error
bug major new
#23: Is it possible to set a random seed - each run of chicago yields a different number of interactions
proposal major new
chicagoTeam
#21: Error while running readAndMerge()
bug major resolved
chicagoTeam
#19: runChicago Error
bug major new
#18: en_full_cis_range and en-trans
task major resolved
#14: bam2chicago bedtools error
task major resolved
#13: Minimum spacing between viewpoints?
task major resolved
chicagoTeam
#11: Altering rmap files in specific genomic regions
task major resolved
#10: Differing numbers of interactions reported in seqmonk and washU output files
bug major resolved
chicagoTeam
#12: correct workflow for weight recalibration
task major resolved
chicagoTeam
#7: ./bam2chicago.sh errors
bug major resolved
chicagoTeam
#8: Error in normaliseOtherEnds when combining multiple datsets
bug major resolved
chicagoTeam
#3: Different problems running replicates
bug major resolved
chicagoTeam
#4: .chinput does not show actual distance?
bug major resolved
chicagoTeam
#5: runChicago.R is not able to parse input parameters
bug major resolved
chicagoTeam
#79: ERROR :: Oligos file, rmap and baitmap production (DpnII enzyme HICUP)
bug critical closed
#54: What does the following messenge mean after I ran runChicago.R
bug critical new
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