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  3. Chicago

Issues

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Issues (1–25 of 33)

Title T P Status Votes Assignee Created Updated Actions
#16: Error: rmap file should have 4 columns
bug minor new
chicagoTeam
#19: runChicago Error
bug major new
#22: run Chicago Error
bug major new
#26: all interactions filtered out - error
bug major new
chicagoTeam
#32: Chicago package cannot using its own truncated maxLBrownEst
bug major new
#33: bam2chicago.sh worng number of fields
bug major new
#35: Cut2 odd behaviour
bug major new
#41: bam2chicago problem
bug major new
#43: 'bam2chicago.sh' problem
bug major new
#44: WashU output
bug major new
#45: Can't change --removeb2b value when I'm doing the design file
bug major new
#46: About bam2chicago.sh error
bug major new
#47: runChicago.R errors during "Reading NBaitsPerBin file" step
bug major new 1
#54: What does the following messenge mean after I ran runChicago.R
bug critical new
#55: readAndMerge() different outputs everytime I run it
bug major new
#56: bam2chicago.sh error: empty baitOnRight.bedpe file
bug major new
#58: runChicago.R error with design directory
bug major new
#59: runChicago.R error | designing-directory not parsing
bug major new
#60: Error in if (cj == upper) next : missing value where TRUE/FALSE needed Calls: chicagoPipeline -> normaliseOtherEnds -> .addTLB -> cut2
bug major new
#61: install Chicago Error: Failed to install 'unknown package' from Bitbucket:
bug major new
#62: OLwithSI in peakEnrichment4Features
bug minor new
#64: runChicago.R: The Brownian OE factors look weird
bug minor new
#65: Error during runChicago.R
bug major new
#66: Bait Coordinates don't intersect with .rmap file
bug major new
#67: Error during Runchicago.R
bug critical new 1
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