1. chicagoTeam Avatar chicagoTeam
  2. Untitled project
  3. Chicago

Issues

Filter by:

Advanced search

Issues (1–25 of 48)

Title T P Status Votes Assignee Created Updated Actions
#74: baitmap file
task minor new
#72: Can I run CHiCAGO with captureC data?
task minor new
#64: runChicago.R: The Brownian OE factors look weird
bug minor new
#62: OLwithSI in peakEnrichment4Features
bug minor new
#34: why there is significant difference in chicago output , when valid pairs are used from HiC Pro and HiCUP and which one is reliable ? and why chicago output also gives trans interaction as significant ?
proposal minor new
#16: Error: rmap file should have 4 columns
bug minor new
chicagoTeam
#9: Examples data / playground data
proposal minor new
#42: create_baitmap_rmap.pl: error:Could not find '1 310' in digest_fragments hash - the digest file and oligo probes file appear to be incompatible.
enhancement major new
#82: Where can Oligos file get?
bug major new
#81: How to get gene-wise score?
bug major new
#78: Error: between has been passed an argument x of type logical
bug major new
#80: How to creat my .baitmap file?
bug major new
#47: runChicago.R errors during "Reading NBaitsPerBin file" step
bug major new 1
#77: bam2chicago.sh breaking in the "Flipping all reads that overlap with the bait on to the right-hand side..."
bug major new
#76: makeBins.R generates spurious bait fragments
bug major new
#75: potential bug in estimateTechnicalNoise
bug major new
#73: issue with running makeDesignFiles_py3.py
task major new
#71: Question about output options in runChicago.R
enhancement major new
#69: Issue with bam2chicago.sh
bug major new
#43: 'bam2chicago.sh' problem
bug major new
#68: parameters setting for double cutters GATC (DpnII) and GANTC
proposal major new 3
#66: Bait Coordinates don't intersect with .rmap file
bug major new
#61: install Chicago Error: Failed to install 'unknown package' from Bitbucket:
bug major new
#65: Error during runChicago.R
bug major new
#60: Error in if (cj == upper) next : missing value where TRUE/FALSE needed Calls: chicagoPipeline -> normaliseOtherEnds -> .addTLB -> cut2
bug major new
  2. 1
  3. 2