1. Christian Arnold Avatar Christian Arnold
  2. diffTF
  3. diffTF

Issues

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Issues (1–25 of 85)

Title T P Status Votes Assignee Created Updated Actions
#92: intersectTFBSAndBAM error
bug major resolved
#91: Inconsistency detected between the normalization factor rownames and the object coverageAll_grouped.df error
bug major resolved
#90: Snakefile Syntax Issue
bug major resolved
#76: The file all.motifs.coord.nucContent.bed.gz is unexpectedly empty
bug major closed
#88: Problems during bootstrap
bug major closed
#85: downloadAllData.sh error
bug major resolved
#80: scATAC-seq data as input for diffTF
bug major open
#79: Update to HOCOMOCO V12 and update genome assembly to mm39
proposal major on hold
#51: Error in singularity ?? & Error in rule intersectPeaksAndTFBS
bug minor closed
#74: Error in rule checkParameterValidity
bug major on hold
#72: Error in rule binningTF
bug major on hold
#53: Weird output -- Volcano plot
task major resolved
#36: upgrading motif bed files
enhancement major resolved
#39: Naming of TF's
proposal minor resolved
#38: Error in summaryFinal.R using cisBP TF motifs
bug major resolved
#61: Is it possible to use ScRNA-Seq data with bulk ATAC-seq data?
task major resolved
#78: Is it possible to use scATAC-seq data as input for diffTF?
proposal critical resolved
#68: Error in rule binningTF
bug critical resolved
#63: WorkflowError in line 247 (The list of TFs is empty)
bug major resolved
#60: An error occured during the snakemake rule resortBAM error
bug major resolved
#73: singularity pull error
bug major resolved
#64: test run on example data stopping with errors
bug major resolved
#69: Error in rule resortBAM
bug major resolved
#54: DiffPeaks.R fails
bug major resolved
#66: Error with runinng the example dataset
bug major resolved
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