Rework uncertainty with pedigree matrices

Issue #27 new
Chris Mutel
repo owner created an issue

Instead of current approach, we should read the basic uncertainty and pedigree matrix values, and calculate the final uncertainty only when processing.

There is an implementation of the pedigree matrix here: https://bitbucket.org/cmutel/pedigree-matrix. We can use functools.lru_cache to make evaluations quick.

This idea and methodology comes from Guillaume Audard.

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