Rework uncertainty with pedigree matrices

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Issue #27 new
Chris Mutel repo owner created an issue

Instead of current approach, we should read the basic uncertainty and pedigree matrix values, and calculate the final uncertainty only when processing.

There is an implementation of the pedigree matrix here: https://bitbucket.org/cmutel/pedigree-matrix. We can use functools.lru_cache to make evaluations quick.

This idea and methodology comes from Guillaume Audard.

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