alignPacBio.py prefix = 'cat' bug

[Former user]

Hi,

I found a bug in alignPacBio.py in line 79 prefix = 'cat' should be prefix = 'cat ', if the input fasta is not compressed.

Thanks.

[John Lee]

Hi,

I found the same issue. I changed line 79 prefix = 'cat' into prefix = 'cat ' , but now I get "cat: write error: Broken pipe" message. Could you please update the script for this matter?

Thank you!

[maria angela diroma]

Hi,

I have the same issue. Did someone solve it?

Thanks