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  2. 3DNETMOD
  3. lib5c

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Issues (1–25 of 81)

Title T P Status Votes Assignee Milestone Created Updated Actions
#81: linting errors related to ambiguous variable names
bug minor resolved
#50: plot_heatmap() crash during chipseq plotting when grange_y is not passed
bug minor resolved
#6: refactor pipeline visualizations to be more modular
proposal trivial open
#55: plotting genomic features to the margins of an ExtendableHeatmap should share a common, reusable API
proposal major new
#79: extendable heatmap system axis modifications should be conisistent, documented, and reusably/compositionally customizable
proposal minor new
#80: simplify pipeline system
proposal trivial new
#78: search links broken on readthedocs
bug minor resolved
#77: version resolution errors when setuptools_scm is installed but lib5c is not installed in editable mode
bug minor resolved
#54: add python3 support
proposal critical resolved
#76: lib5c toolbox tools may be sensitive to quoting in a platform-dependent way
bug major resolved
#73: pipeline fails when using python 3
bug major closed
#75: provide functionality to get demo data from within python
proposal major resolved
#74: [docs] explain how to augment a primermap with GC content and length information
proposal trivial new
#72: rework files included in test folder
proposal major new
#51: ExtendableHeatmap should support plotting rectangular arrays
enhancement major new
#71: AttributeError: 'numpy.ndarray' object has no attribute 'keys' when thresholding and when there is only one region
bug major resolved
#70: kr balancing doesn't work when empty rows/columns exist in the matrix
bug major new
#69: y-axis gene tracks missing from trans heatmaps
bug minor resolved
#68: pre-release versions always fail docker build because of discrepancies between the wheel file name and the version tag
bug minor resolved
#67: docker build should not require any "prereq" steps like building the wheel on the host machine
proposal minor resolved
#20: some Dataset.apply_*() functions don't work inplace
enhancement trivial new
#19: improvements to Dataset.select()
proposal trivial new
#24: @lru_cache typechecker fragility (crashes on empty dicts)
bug minor new
#25: plotting API should support custom tick labels
enhancement minor resolved
#14: pca tool's -s/--separate_colors should be extracted as a re-usable helper
enhancement minor on hold
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