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  2. 3DNETMOD
  3. lib5c

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Issues (26–50 of 81)

Title T P Status Votes Assignee Milestone Created Updated Actions
#17: reduce boilerplate re-use in toolbox
proposal trivial on hold
#8: expose expected model plotting as a command line tool
enhancement trivial on hold
#66: redesign CLI framework
proposal major new
#53: lib5c.util.optimization.array_newton() is redundant with latest scipy versions
proposal trivial on hold
#36: multiprocessing AssertionError on Windows with old Python versions
bug major wontfix
#64: [docs] Installing from a tarball section on Install page is obsolete
bug trivial resolved
#52: dependencies could be streamlined
proposal major new
#37: binning could be faster in certain cases
proposal minor new
#49: add option to plot only longest isoform
enhancement minor new
#60: lowess_fit() should allow extrapolation
enhancement minor resolved
#59: ImportError: cannot import name to_rgba when plotting heatmap
bug minor resolved
#63: [docs] PEP 8 link in Testing, building, and releasing docs page is incorrect
bug trivial resolved
#45: support lognormal model fed by exp(mu) instead of mean of unlogged counts
proposal trivial new
#4: use different names for the parallelized versions of functions
proposal trivial wontfix
#65: ExtendableHeatmap add_chipseq_track() should support color-coding each feature
enhancement minor new
#62: ExtendableHeatmap's outline_domains() draws over add_rectangles()
bug minor new
#61: uniform_range_coverage_sample() with log_space=True returns incorrect number of samples
bug minor new
#48: add support for fragment-level heatmap plotting in ExtendableHeatmap
enhancement minor new
#46: consider reworking gene track inclusion
proposal minor new
#58: cluster outlining could be faster
enhancement minor new
#57: display of plotting output in tutorial notebooks is inconsistent
enhancement trivial closed
#56: ValueError when loading non-npz counts file with load_counts()
bug major resolved
#47: consider adding a changelog
proposal minor closed
#28: would heatmap plotting be faster if we used PatchCollection?
enhancement minor closed
#44: installation fails on windows with ImportError: No module named pwd
bug major resolved
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