1. Cremins Lab Avatar Cremins Lab
  2. 3DNETMOD
  3. lib5c

Issues

Filter by:

Advanced search

Issues (51–75 of 81)

Title T P Status Votes Assignee Milestone Created Updated Actions
#34: could clustering use label() from scipy.ndimage instead of scikit-image?
proposal minor resolved
#35: expected modeling could be sped up
enhancement minor resolved
#26: plot_heatmap() should accept a track_names kwarg
enhancement minor closed
#33: qnorm algorithm could be faster
enhancement minor closed
#42: RuntimeWarnings during importing of anything that touches pandas
bug minor wontfix
#41: rework replicate name inference
proposal minor closed
#40: IOError when passing a wildcard input file pattern that has only one match to a tool
bug minor resolved
#39: pipeline fails on qnorm step when replicate names contain a common prefix or postfix
bug minor resolved
#38: KeyError when writing kappa to outfile after thresholding with concordant=False
bug minor resolved
#43: custom legends don't work in @plotter functions
bug minor resolved
#27: check_outdir() can crash with OSError: [Errno 17] File exists
bug minor resolved
#32: git-describe version style breaks dependency management
bug major resolved
#31: using a blank label with ExtendableHeatmap.add_chipseq_track() should be easier
enhancement minor resolved
#30: pipeline runs one ThresholdTask per replicate (only one is needed)
bug minor resolved
#29: can distribution overlay plotting be simplified by using sns.FacetGrid?
proposal minor new
#9: refactor plotters and writers to use check_outdir() consistently
proposal trivial closed
#11: correlation tool fails to call check_outdir()
bug minor closed
#22: standardize plot aesthetics
proposal minor closed
#18: lib5c dd-curve crashes when plotting only one rep
bug major closed
#21: refactor counts/pixelmap parser names and standardize usage
proposal major closed
#23: standardize plotting API
proposal major closed
#16: reorganize toolkit to separate out plotters
proposal trivial resolved
#15: add distance dependence tool to toolkit
enhancement minor resolved
#13: check if @pretty_decorator makes the dependency on multiprocess obsolete
task minor closed
#12: add MDS as an algorithm option under the PCA tool
enhancement minor closed
  2. 1
  3. 2
  4. 3
  5. 4