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  2. 3DNETMOD
  3. lib5c

Issues

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Issues (1–25 of 48)

Title T P Status Votes Assignee Milestone Created Updated Actions
#81: linting errors related to ambiguous variable names
bug minor resolved
#50: plot_heatmap() crash during chipseq plotting when grange_y is not passed
bug minor resolved
#79: extendable heatmap system axis modifications should be conisistent, documented, and reusably/compositionally customizable
proposal minor new
#78: search links broken on readthedocs
bug minor resolved
#77: version resolution errors when setuptools_scm is installed but lib5c is not installed in editable mode
bug minor resolved
#69: y-axis gene tracks missing from trans heatmaps
bug minor resolved
#68: pre-release versions always fail docker build because of discrepancies between the wheel file name and the version tag
bug minor resolved
#67: docker build should not require any "prereq" steps like building the wheel on the host machine
proposal minor resolved
#24: @lru_cache typechecker fragility (crashes on empty dicts)
bug minor new
#25: plotting API should support custom tick labels
enhancement minor resolved
#14: pca tool's -s/--separate_colors should be extracted as a re-usable helper
enhancement minor on hold
#37: binning could be faster in certain cases
proposal minor new
#49: add option to plot only longest isoform
enhancement minor new
#60: lowess_fit() should allow extrapolation
enhancement minor resolved
#59: ImportError: cannot import name to_rgba when plotting heatmap
bug minor resolved
#65: ExtendableHeatmap add_chipseq_track() should support color-coding each feature
enhancement minor new
#62: ExtendableHeatmap's outline_domains() draws over add_rectangles()
bug minor new
#61: uniform_range_coverage_sample() with log_space=True returns incorrect number of samples
bug minor new
#48: add support for fragment-level heatmap plotting in ExtendableHeatmap
enhancement minor new
#46: consider reworking gene track inclusion
proposal minor new
#58: cluster outlining could be faster
enhancement minor new
#47: consider adding a changelog
proposal minor closed
#28: would heatmap plotting be faster if we used PatchCollection?
enhancement minor closed
#34: could clustering use label() from scipy.ndimage instead of scikit-image?
proposal minor resolved
#35: expected modeling could be sped up
enhancement minor resolved
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