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  2. 3DNETMOD
  3. lib5c

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Issues (1–25 of 48)

Title T P Status Votes Assignee Milestone Created Updated Actions
#13: check if @pretty_decorator makes the dependency on multiprocess obsolete
task minor closed
#5: move pca plotting code from i5c to lib5c
task minor closed
#79: extendable heatmap system axis modifications should be conisistent, documented, and reusably/compositionally customizable
proposal minor new
#67: docker build should not require any "prereq" steps like building the wheel on the host machine
proposal minor resolved
#37: binning could be faster in certain cases
proposal minor new
#46: consider reworking gene track inclusion
proposal minor new
#47: consider adding a changelog
proposal minor closed
#34: could clustering use label() from scipy.ndimage instead of scikit-image?
proposal minor resolved
#41: rework replicate name inference
proposal minor closed
#29: can distribution overlay plotting be simplified by using sns.FacetGrid?
proposal minor new
#22: standardize plot aesthetics
proposal minor closed
#7: modularize the plotting system
proposal minor resolved
#25: plotting API should support custom tick labels
enhancement minor resolved
#14: pca tool's -s/--separate_colors should be extracted as a re-usable helper
enhancement minor on hold
#49: add option to plot only longest isoform
enhancement minor new
#60: lowess_fit() should allow extrapolation
enhancement minor resolved
#65: ExtendableHeatmap add_chipseq_track() should support color-coding each feature
enhancement minor new
#48: add support for fragment-level heatmap plotting in ExtendableHeatmap
enhancement minor new
#58: cluster outlining could be faster
enhancement minor new
#28: would heatmap plotting be faster if we used PatchCollection?
enhancement minor closed
#35: expected modeling could be sped up
enhancement minor resolved
#26: plot_heatmap() should accept a track_names kwarg
enhancement minor closed
#33: qnorm algorithm could be faster
enhancement minor closed
#31: using a blank label with ExtendableHeatmap.add_chipseq_track() should be easier
enhancement minor resolved
#15: add distance dependence tool to toolkit
enhancement minor resolved
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