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  2. 3DNETMOD
  3. lib5c

Issues

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Issues (1–25 of 48)

Title T P Status Votes Assignee Milestone Created Updated Actions
#81: linting errors related to ambiguous variable names
bug minor resolved
#79: extendable heatmap system axis modifications should be conisistent, documented, and reusably/compositionally customizable
proposal minor new
#78: search links broken on readthedocs
bug minor resolved
#77: version resolution errors when setuptools_scm is installed but lib5c is not installed in editable mode
bug minor resolved
#69: y-axis gene tracks missing from trans heatmaps
bug minor resolved
#68: pre-release versions always fail docker build because of discrepancies between the wheel file name and the version tag
bug minor resolved
#67: docker build should not require any "prereq" steps like building the wheel on the host machine
proposal minor resolved
#24: @lru_cache typechecker fragility (crashes on empty dicts)
bug minor new
#25: plotting API should support custom tick labels
enhancement minor resolved
#14: pca tool's -s/--separate_colors should be extracted as a re-usable helper
enhancement minor on hold
#37: binning could be faster in certain cases
proposal minor new
#61: uniform_range_coverage_sample() with log_space=True returns incorrect number of samples
bug minor new
#47: consider adding a changelog
proposal minor closed
#28: would heatmap plotting be faster if we used PatchCollection?
enhancement minor closed
#34: could clustering use label() from scipy.ndimage instead of scikit-image?
proposal minor resolved
#35: expected modeling could be sped up
enhancement minor resolved
#26: plot_heatmap() should accept a track_names kwarg
enhancement minor closed
#33: qnorm algorithm could be faster
enhancement minor closed
#42: RuntimeWarnings during importing of anything that touches pandas
bug minor wontfix
#41: rework replicate name inference
proposal minor closed
#40: IOError when passing a wildcard input file pattern that has only one match to a tool
bug minor resolved
#39: pipeline fails on qnorm step when replicate names contain a common prefix or postfix
bug minor resolved
#38: KeyError when writing kappa to outfile after thresholding with concordant=False
bug minor resolved
#43: custom legends don't work in @plotter functions
bug minor resolved
#27: check_outdir() can crash with OSError: [Errno 17] File exists
bug minor resolved
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