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Andrew Dalke committed 8c44a3e

Escaped the '%' which was in the help string. It's now '%%'

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 parser.add_argument("--threshold", default="1.0", type=parse_threshold, help=
                     "Minimum structure match threshold. A value of 1.0 means that the common "
                     "substructure must be in all of the input structures. A value of 0.8 finds "
-                    "the largest substructure which is common to at least 80% of the input "
+                    "the largest substructure which is common to at least 80%% of the input "
                     "structures. (Default: 1.0)")
 
 parser.add_argument("--atom-class-tag", metavar="TAG", help=