Commits

Author Commit Message Labels Comments Date
Giovanni Marco Dall'Olio
ADD: a script to create a batch file to launch positive simulations
Giovanni Marco Dall'Olio
ADD: script used by Irene to launch simulations
Giovanni Marco Dall'Olio
REFACT: renaming output files
Giovanni Marco Dall'Olio
ADD: documentation on how the output files must be named
Giovanni Marco Dall'Olio
ADD: option to skip conversion to plink; fixed some file path
Giovanni Marco Dall'Olio
REFACT: keeping the .pos-1/2/3 and .hap-1/2/3 files in the results
Giovanni Marco Dall'Olio
ADD: job.sh script to launch all simulations
Giovanni Marco Dall'Olio
ADD: added a Makefile rule to generate jobs
Giovanni Marco Dall'Olio
REFACT: generate_cosi_simulation now creates only a BASH file that must be executed
Giovanni Marco Dall'Olio
ADD: integrated launch_simulations_cnag into generate_cosi_simulations.py
Giovanni Marco Dall'Olio
FIX: modified cosi, to get a clearer error message when a file is missing
Giovanni Marco Dall'Olio
PARAMS: commenting out "recomb_file" line in all simulation parameters
Giovanni Marco Dall'Olio
ADD: a python script to launch all simulations
Giovanni Marco Dall'Olio
ADD: other files needed to run cosi
Giovanni Marco Dall'Olio
ADD: run.pl now requires the path to the params file as an argument
Giovanni Marco Dall'Olio
FIX: adapting to local computer
Giovanni Marco Dall'Olio
ADD: included cosi_to_plink script
Giovanni Marco Dall'Olio
ADD: imported all parameter files from Irene
Giovanni Marco Dall'Olio
ADD: CNAG cluster manual
Giovanni Marco Dall'Olio
ADD: setting ulimit -l in the template config file
Giovanni Marco Dall'Olio
ADD: a template for CNAG cluster jobs
Giovanni Marco Dall'Olio
ADD: imported cosi binaries and examples
Giovanni Marco Dall'Olio
ADD: imported Manu'sscript to launch COSI