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Giovanni Marco Dall'Olio committed 8a6bddf

Fix: improved the README, including instructions and description of the pipeline

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+========================================
+Compare Node Centralities with Cytoscape
+========================================
+
+This is an example of script to automatize Cytoscape. In this case, I have
+calculated different measures of node centralities in a network (thanks to the
+Centiscape plugin), and automatically generated a report to show the
+differences between them.
+
+Pipeline:
+----------
+
+* create a network on Cytoscape
+* use the Centiscape plugin to calculate node centralities
+* install and activate the Cytoscape RPC plugin
+* Documentation for the Cytoscape RPC plugin and python: https://wiki.nbic.nl/index.php/CytoscapeRPC_Python_Example python scripts for Cytoscape
+* run the script
+* the plots will be generated in the figures/ directory
+* legends and histograms of distribution are generated with python's matplotlib (I couldn't find how to export the legend from RPC, and in any case, Cytoscape's legend looks ugly)
+

README.txt

-python scripts for Cytoscape