Commits

Giovanni Marco Dall'Olio  committed f3751ee

TRACKS: changed the windowingFunction from mean to maximum

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  • Parent commits 2c2a21e

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Files changed (2)

File results/ucsc_tracks/hg19/trackDb.txt

 dragAndDrop on
 dataVersion Genotypes: 1000 Genomes, April 2012. Tracks: May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 0 1
 dragAndDrop on
 dataVersion Genotypes: 1000 Genomes, April 2012. Tracks: May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 0 1
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 0 522
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 0 522
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 0 6.0557
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 0 6.0557
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 1 9.4361
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 1 9.4361
 #dragAndDrop on
 #dataVersion May 2013
 #smoothingWindow 5
-#windowingFunction mean
+#windowingFunction maximum
 #graphType points
 #viewUi on
 #type bigWig 0 9800.3552
 #dragAndDrop on
 #dataVersion May 2013
 #smoothingWindow 5
-#windowingFunction mean
+#windowingFunction maximum
 #graphType points
 #viewUi on
 #type bigWig 0 9800.3552
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 1 27
 dragAndDrop on
 dataVersion May 2013
 smoothingWindow 5
-windowingFunction mean
+windowingFunction maximum
 graphType points
 viewUi on
 type bigWig 1 27

File src/report_to_wiggle.R

                 graphType bar
                 color 0,174,0
                 smoothingWindow off
-                windowingFunction mean
+                windowingFunction maximum
                 priority 93
                 maxHeightPixels 128:64:1
                 viewLimits 0:1
 if (arg_values$only_trackDB == F) {
     for (pop in allpops) {
         outputtrackfilename.bigWig = paste(arg_values$outputfolder, "/", network_property, '_', pop, '.bw', sep='')
-        outputtrackfilename.bigWig.short = paste(network_property, '_', pop, '.bw', sep='')
+#        outputtrackfilename.bigWig.short = paste(network_property, '_', pop, '.bw', sep='')
         outputtrackfilename = paste(arg_values$outputfolder, "/", network_property, '_', pop, '.wiggle', sep='')
         # convert wiggle file to bigWig
         system(paste("wigToBigWig", outputtrackfilename, "results/ucsc_tracks/chrom.sizes", outputtrackfilename.bigWig, sep=' '))
         'dragAndDrop on',
         paste('dataVersion', dataversion),
         'smoothingWindow 11',
-        'windowingFunction mean',
+        'windowingFunction maximum',
         'graphType points',
         'viewUi on',
         paste('type bigWig', wigminglob, wigmaxglob),
         'dragAndDrop on',
         paste('dataVersion', dataversion),
         'smoothingWindow 11',
-        'windowingFunction mean',
+        'windowingFunction maximum',
         'graphType points',
         'viewUi on',
         paste('type bigWig', wigminglob, wigmaxglob),