Commits

Giovanni Marco Dall'Olio committed fd683eb

1.0.9e: --phenotype option is not case sensitive; can subsample one individual

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  • Parent commits b8a1da4

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Files changed (2)

logs/upload_pypi.log

 running upload
 Submitting dist/vcf2networks-1.0.9d.tar.gz to http://pypi.python.org/pypi
 Server response (200): OK
+running sdist
+running egg_info
+creating vcf2networks.egg-info
+writing requirements to vcf2networks.egg-info/requires.txt
+writing vcf2networks.egg-info/PKG-INFO
+writing top-level names to vcf2networks.egg-info/top_level.txt
+writing dependency_links to vcf2networks.egg-info/dependency_links.txt
+writing entry points to vcf2networks.egg-info/entry_points.txt
+writing manifest file 'vcf2networks.egg-info/SOURCES.txt'
+reading manifest file 'vcf2networks.egg-info/SOURCES.txt'
+writing manifest file 'vcf2networks.egg-info/SOURCES.txt'
+warning: sdist: standard file not found: should have one of README, README.txt
+
+creating vcf2networks-1.0.9e
+creating vcf2networks-1.0.9e/src
+creating vcf2networks-1.0.9e/test
+creating vcf2networks-1.0.9e/vcf2networks.egg-info
+making hard links in vcf2networks-1.0.9e...
+hard linking setup.cfg -> vcf2networks-1.0.9e
+hard linking setup.py -> vcf2networks-1.0.9e
+hard linking src/GenotypeNetwork.py -> vcf2networks-1.0.9e/src
+hard linking src/__init__.py -> vcf2networks-1.0.9e/src
+hard linking src/binary_to_network.py -> vcf2networks-1.0.9e/src
+hard linking src/cosi_to_binary.py -> vcf2networks-1.0.9e/src
+hard linking src/custom_exceptions.py -> vcf2networks-1.0.9e/src
+hard linking src/filteredvcf_to_binary.py -> vcf2networks-1.0.9e/src
+hard linking src/generate_network_report.py -> vcf2networks-1.0.9e/src
+hard linking src/get_gene_coords.py -> vcf2networks-1.0.9e/src
+hard linking src/get_genotypes_from_1000Genomes.py -> vcf2networks-1.0.9e/src
+hard linking src/get_simulations_background.py -> vcf2networks-1.0.9e/src
+hard linking src/vcf2networks.py -> vcf2networks-1.0.9e/src
+hard linking test/test_AveragePathLenghtCalculation.py -> vcf2networks-1.0.9e/test
+hard linking test/test_BinaryToNetwork.py -> vcf2networks-1.0.9e/test
+hard linking test/test_CosiToBinary.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GenotypeNetwork.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GenotypeNetworkDistance.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GenotypeNetworkIndividuals.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GetGenotypes.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReadFromGraphml.py -> vcf2networks-1.0.9e/test
+hard linking test/test_Report.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReportAdvancedFeatures.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReportByNode.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReportWindows.py -> vcf2networks-1.0.9e/test
+hard linking test/test_SimulationsBackground.py -> vcf2networks-1.0.9e/test
+hard linking test/test_SubgraphByPop.py -> vcf2networks-1.0.9e/test
+hard linking test/test_SubgraphByPopFromFile.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ValuesByNodeReport.py -> vcf2networks-1.0.9e/test
+hard linking test/test_Vcf2Binary.py -> vcf2networks-1.0.9e/test
+hard linking test/test_Vcf2Networks_call.py -> vcf2networks-1.0.9e/test
+hard linking test/test_commandline_options.py -> vcf2networks-1.0.9e/test
+hard linking vcf2networks.egg-info/PKG-INFO -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/SOURCES.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/dependency_links.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/entry_points.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/requires.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/top_level.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+copying setup.cfg -> vcf2networks-1.0.9e
+Writing vcf2networks-1.0.9e/setup.cfg
+Creating tar archive
+removing 'vcf2networks-1.0.9e' (and everything under it)
+running upload
+Submitting dist/vcf2networks-1.0.9e.tar.gz to http://pypi.python.org/pypi
+Upload failed (401): You must be identified to edit package information
+running sdist
+running egg_info
+writing requirements to vcf2networks.egg-info/requires.txt
+writing vcf2networks.egg-info/PKG-INFO
+writing top-level names to vcf2networks.egg-info/top_level.txt
+writing dependency_links to vcf2networks.egg-info/dependency_links.txt
+writing entry points to vcf2networks.egg-info/entry_points.txt
+reading manifest file 'vcf2networks.egg-info/SOURCES.txt'
+writing manifest file 'vcf2networks.egg-info/SOURCES.txt'
+warning: sdist: standard file not found: should have one of README, README.txt
+
+creating vcf2networks-1.0.9e
+creating vcf2networks-1.0.9e/src
+creating vcf2networks-1.0.9e/test
+creating vcf2networks-1.0.9e/vcf2networks.egg-info
+making hard links in vcf2networks-1.0.9e...
+hard linking setup.cfg -> vcf2networks-1.0.9e
+hard linking setup.py -> vcf2networks-1.0.9e
+hard linking src/GenotypeNetwork.py -> vcf2networks-1.0.9e/src
+hard linking src/__init__.py -> vcf2networks-1.0.9e/src
+hard linking src/binary_to_network.py -> vcf2networks-1.0.9e/src
+hard linking src/cosi_to_binary.py -> vcf2networks-1.0.9e/src
+hard linking src/custom_exceptions.py -> vcf2networks-1.0.9e/src
+hard linking src/filteredvcf_to_binary.py -> vcf2networks-1.0.9e/src
+hard linking src/generate_network_report.py -> vcf2networks-1.0.9e/src
+hard linking src/get_gene_coords.py -> vcf2networks-1.0.9e/src
+hard linking src/get_genotypes_from_1000Genomes.py -> vcf2networks-1.0.9e/src
+hard linking src/get_simulations_background.py -> vcf2networks-1.0.9e/src
+hard linking src/vcf2networks.py -> vcf2networks-1.0.9e/src
+hard linking test/test_AveragePathLenghtCalculation.py -> vcf2networks-1.0.9e/test
+hard linking test/test_BinaryToNetwork.py -> vcf2networks-1.0.9e/test
+hard linking test/test_CosiToBinary.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GenotypeNetwork.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GenotypeNetworkDistance.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GenotypeNetworkIndividuals.py -> vcf2networks-1.0.9e/test
+hard linking test/test_GetGenotypes.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReadFromGraphml.py -> vcf2networks-1.0.9e/test
+hard linking test/test_Report.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReportAdvancedFeatures.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReportByNode.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ReportWindows.py -> vcf2networks-1.0.9e/test
+hard linking test/test_SimulationsBackground.py -> vcf2networks-1.0.9e/test
+hard linking test/test_SubgraphByPop.py -> vcf2networks-1.0.9e/test
+hard linking test/test_SubgraphByPopFromFile.py -> vcf2networks-1.0.9e/test
+hard linking test/test_ValuesByNodeReport.py -> vcf2networks-1.0.9e/test
+hard linking test/test_Vcf2Binary.py -> vcf2networks-1.0.9e/test
+hard linking test/test_Vcf2Networks_call.py -> vcf2networks-1.0.9e/test
+hard linking test/test_commandline_options.py -> vcf2networks-1.0.9e/test
+hard linking vcf2networks.egg-info/PKG-INFO -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/SOURCES.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/dependency_links.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/entry_points.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/requires.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+hard linking vcf2networks.egg-info/top_level.txt -> vcf2networks-1.0.9e/vcf2networks.egg-info
+copying setup.cfg -> vcf2networks-1.0.9e
+Writing vcf2networks-1.0.9e/setup.cfg
+Creating tar archive
+removing 'vcf2networks-1.0.9e' (and everything under it)
+running upload
+Submitting dist/vcf2networks-1.0.9e.tar.gz to http://pypi.python.org/pypi
+Server response (200): OK
 
-__version__ = '1.0.9d'
+__version__ = '1.0.9e'